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  5. Pp3c19_21960V3.1

Pp3c19_21960V3.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG0001679 (Archaeplastida) Phylogenetic Tree(s): OG0001679_tree ,
OG_05_0001586 (LandPlants) Phylogenetic Tree(s): OG_05_0001586_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c19_21960V3.1
Cluster HCCA: Cluster_235

Target Alias Description ECC score Gene Family Method Actions
AT1G12910 LWD1, ATAN11 Transducin/WD40 repeat-like superfamily protein 0.02 Archaeplastida
Cpa|evm.model.tig00000204.79 No alias WD repeat-containing protein LWD1 OS=Arabidopsis thaliana 0.01 Archaeplastida
Mp5g03900.1 No alias LWD circadian clock activation factor 0.03 Archaeplastida
Pp3c21_21010V3.1 No alias Transducin/WD40 repeat-like superfamily protein 0.03 Archaeplastida
Solyc04g082470.3.1 No alias LWD circadian clock activation factor 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0042765 GPI-anchor transamidase complex IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0044432 endoplasmic reticulum part IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!