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  5. Pp3c1_12990V3.1

Pp3c1_12990V3.1


Description : Coatomer, alpha subunit


Gene families : OG0002801 (Archaeplastida) Phylogenetic Tree(s): OG0002801_tree ,
OG_05_0002931 (LandPlants) Phylogenetic Tree(s): OG_05_0002931_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_12990V3.1
Cluster HCCA: Cluster_111

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00001p00220200 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.09 Archaeplastida
AMTR_s00186p00045360 evm_27.TU.AmTr_v1... Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
AT1G62020 No alias Coatomer, alpha subunit 0.1 Archaeplastida
AT2G21390 No alias Coatomer, alpha subunit 0.13 Archaeplastida
Cpa|evm.model.tig00000144.151 No alias Coatomer subunit alpha-2 OS=Oryza sativa subsp. japonica 0.02 Archaeplastida
Cpa|evm.model.tig00000144.152 No alias Coatomer subunit alpha-3 OS=Oryza sativa subsp. japonica 0.05 Archaeplastida
Cre13.g565850 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.09 Archaeplastida
GSVIVT01009813001 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 Archaeplastida
Gb_09624 No alias subunit alpha of coat protein complex 0.08 Archaeplastida
Gb_15817 No alias subunit alpha of coat protein complex 0.1 Archaeplastida
LOC_Os03g50340.1 No alias subunit alpha of coat protein complex 0.12 Archaeplastida
LOC_Os03g50350.1 No alias subunit alpha of coat protein complex 0.11 Archaeplastida
LOC_Os09g04110.1 No alias subunit alpha of coat protein complex 0.12 Archaeplastida
MA_10428405g0010 No alias subunit alpha of coat protein complex 0.07 Archaeplastida
MA_10429054g0020 No alias subunit alpha of coat protein complex 0.05 Archaeplastida
MA_10429054g0030 No alias Coatomer subunit alpha-1 OS=Arabidopsis thaliana... 0.07 Archaeplastida
Mp3g00050.1 No alias subunit alpha of coat protein complex 0.09 Archaeplastida
Smo77651 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.02 Archaeplastida
Smo85610 No alias Vesicle trafficking.Coat protein I (COPI) coatomer... 0.07 Archaeplastida
Solyc04g080980.2.1 No alias subunit alpha of coat protein complex 0.13 Archaeplastida
Solyc07g032100.3.1 No alias subunit alpha of coat protein complex 0.14 Archaeplastida
Zm00001e005441_P001 No alias subunit alpha of coat protein complex 0.11 Archaeplastida
Zm00001e012192_P001 No alias subunit alpha of coat protein complex 0.1 Archaeplastida
Zm00001e016505_P002 No alias subunit alpha of coat protein complex 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004576 oligosaccharyl transferase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006810 transport IEP Neighborhood
BP GO:0006886 intracellular protein transport IEP Neighborhood
BP GO:0008104 protein localization IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
BP GO:0015031 protein transport IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0016192 vesicle-mediated transport IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0017016 Ras GTPase binding IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
CC GO:0030117 membrane coat IEP Neighborhood
CC GO:0030118 clathrin coat IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030125 clathrin vesicle coat IEP Neighborhood
CC GO:0030130 clathrin coat of trans-Golgi network vesicle IEP Neighborhood
CC GO:0030132 clathrin coat of coated pit IEP Neighborhood
MF GO:0031267 small GTPase binding IEP Neighborhood
BP GO:0033036 macromolecule localization IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044425 membrane part IEP Neighborhood
CC GO:0044431 Golgi apparatus part IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0045184 establishment of protein localization IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
BP GO:0071702 organic substance transport IEP Neighborhood
BP GO:0071705 nitrogen compound transport IEP Neighborhood
CC GO:0098796 membrane protein complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!