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  5. Pp3c1_270V3.1

Pp3c1_270V3.1


Description : RNA polymerase II large subunit


Gene families : OG0006451 (Archaeplastida) Phylogenetic Tree(s): OG0006451_tree ,
OG_05_0004749 (LandPlants) Phylogenetic Tree(s): OG_05_0004749_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_270V3.1
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Pp3c14_4000V3.1 No alias RNA polymerase II large subunit 0.04 Archaeplastida
Pp3c14_4010V3.1 No alias RNA polymerase II large subunit 0.06 Archaeplastida
Pp3c19_15140V3.1 No alias RNA polymerase II large subunit 0.03 Archaeplastida
Pp3c1_30040V3.1 No alias RNA polymerase II large subunit 0.02 Archaeplastida
Pp3c4_24940V3.1 No alias RNA polymerase II large subunit 0.04 Archaeplastida
Pp3c5_1410V3.1 No alias RNA polymerase II large subunit 0.02 Archaeplastida
Pp3c6_15700V3.1 No alias nuclear RNA polymerase C1 0.04 Archaeplastida
Pp3c8_4620V3.1 No alias RNA polymerase II large subunit 0.03 Archaeplastida
Pp3s67_110V3.1 No alias RNA polymerase II large subunit 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006313 transposition, DNA-mediated IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
BP GO:0032196 transposition IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
InterPro domains Description Start Stop
IPR000722 RNA_pol_asu 1 55
IPR007081 RNA_pol_Rpb1_5 228 270
IPR007083 RNA_pol_Rpb1_4 134 221
No external refs found!