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  5. Pp3c1_283V3.1

Pp3c1_283V3.1


Description : RNA polymerase II fifth largest subunit, C


Gene families : OG0011840 (Archaeplastida) Phylogenetic Tree(s): OG0011840_tree ,
OG_05_0011648 (LandPlants) Phylogenetic Tree(s): OG_05_0011648_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_283V3.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11560V3.1 No alias Eukaryotic rpb5 RNA polymerase subunit family protein 0.05 Archaeplastida
Pp3c15_19440V3.1 No alias Eukaryotic rpb5 RNA polymerase subunit family protein 0.03 Archaeplastida
Pp3c16_12587V3.1 No alias Eukaryotic rpb5 RNA polymerase subunit family protein 0.03 Archaeplastida
Pp3c2_29376V3.1 No alias No annotation 0.04 Archaeplastida
Pp3c4_1940V3.1 No alias Eukaryotic rpb5 RNA polymerase subunit family protein 0.05 Archaeplastida
Pp3c4_21420V3.1 No alias Eukaryotic rpb5 RNA polymerase subunit family protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
MF GO:0016491 oxidoreductase activity IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR000783 RNA_pol_subH/Rpb5_C 109 177
No external refs found!