Description : Ribosomal protein L13 family protein
Gene families : OG0002028 (Archaeplastida) Phylogenetic Tree(s): OG0002028_tree ,
OG_05_0007297 (LandPlants) Phylogenetic Tree(s): OG_05_0007297_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Type | Description | Actions |
---|---|---|
Neighborhood | HRR: Pp3c1_3220V3.1 | |
Cluster | HCCA: Cluster_114 |
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
Cpa|evm.model.tig00020912.24 | No alias | 50S ribosomal protein L13, chloroplastic OS=Arabidopsis thaliana | 0.02 | Archaeplastida | |
Cre06.g264350 | No alias | Protein biosynthesis.organelle translation... | 0.03 | Archaeplastida | |
GSVIVT01001821001 | No alias | Protein biosynthesis.organelle translation... | 0.02 | Archaeplastida | |
LOC_Os01g54540.1 | No alias | component psRPL13 of large ribosomal subunit proteome | 0.03 | Archaeplastida | |
Mp3g07030.1 | No alias | component psRPL13 of large ribosomal subunit proteome | 0.01 | Archaeplastida | |
Mp8g16920.1 | No alias | component mtRPL13 of large ribosomal subunit proteome | 0.03 | Archaeplastida | |
Smo7665 | No alias | Protein biosynthesis.organelle translation... | 0.02 | Archaeplastida | |
Solyc09g092090.4.1 | No alias | component mtRPL13 of large ribosomal subunit proteome | 0.05 | Archaeplastida |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003735 | structural constituent of ribosome | IEA | Interproscan |
CC | GO:0005840 | ribosome | IEA | Interproscan |
BP | GO:0006412 | translation | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0000413 | protein peptidyl-prolyl isomerization | IEP | Neighborhood |
MF | GO:0003677 | DNA binding | IEP | Neighborhood |
MF | GO:0003697 | single-stranded DNA binding | IEP | Neighborhood |
MF | GO:0003755 | peptidyl-prolyl cis-trans isomerase activity | IEP | Neighborhood |
MF | GO:0003824 | catalytic activity | IEP | Neighborhood |
MF | GO:0004175 | endopeptidase activity | IEP | Neighborhood |
MF | GO:0004298 | threonine-type endopeptidase activity | IEP | Neighborhood |
CC | GO:0005839 | proteasome core complex | IEP | Neighborhood |
BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | Neighborhood |
BP | GO:0006351 | transcription, DNA-templated | IEP | Neighborhood |
BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | Neighborhood |
MF | GO:0008168 | methyltransferase activity | IEP | Neighborhood |
BP | GO:0016070 | RNA metabolic process | IEP | Neighborhood |
MF | GO:0016740 | transferase activity | IEP | Neighborhood |
MF | GO:0016741 | transferase activity, transferring one-carbon groups | IEP | Neighborhood |
MF | GO:0016859 | cis-trans isomerase activity | IEP | Neighborhood |
BP | GO:0018130 | heterocycle biosynthetic process | IEP | Neighborhood |
BP | GO:0018193 | peptidyl-amino acid modification | IEP | Neighborhood |
BP | GO:0018208 | peptidyl-proline modification | IEP | Neighborhood |
BP | GO:0019438 | aromatic compound biosynthetic process | IEP | Neighborhood |
BP | GO:0032774 | RNA biosynthetic process | IEP | Neighborhood |
CC | GO:0033643 | host cell part | IEP | Neighborhood |
CC | GO:0033646 | host intracellular part | IEP | Neighborhood |
CC | GO:0033647 | host intracellular organelle | IEP | Neighborhood |
CC | GO:0033648 | host intracellular membrane-bounded organelle | IEP | Neighborhood |
BP | GO:0034654 | nucleobase-containing compound biosynthetic process | IEP | Neighborhood |
CC | GO:0042025 | host cell nucleus | IEP | Neighborhood |
CC | GO:0044217 | other organism part | IEP | Neighborhood |
BP | GO:0046483 | heterocycle metabolic process | IEP | Neighborhood |
BP | GO:0051603 | proteolysis involved in cellular protein catabolic process | IEP | Neighborhood |
MF | GO:0070003 | threonine-type peptidase activity | IEP | Neighborhood |
BP | GO:0090304 | nucleic acid metabolic process | IEP | Neighborhood |
BP | GO:0097659 | nucleic acid-templated transcription | IEP | Neighborhood |
BP | GO:1901360 | organic cyclic compound metabolic process | IEP | Neighborhood |
BP | GO:1901362 | organic cyclic compound biosynthetic process | IEP | Neighborhood |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR005822 | Ribosomal_L13 | 22 | 140 |
No external refs found! |