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  5. Pp3c1_37280V3.1

Pp3c1_37280V3.1


Description : DEA(D/H)-box RNA helicase family protein


Gene families : OG0000758 (Archaeplastida) Phylogenetic Tree(s): OG0000758_tree ,
OG_05_0001508 (LandPlants) Phylogenetic Tree(s): OG_05_0001508_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c1_37280V3.1
Cluster HCCA: Cluster_95

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00121p00103870 evm_27.TU.AmTr_v1... DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT1G16280 AtRH36, SWA3, RH36 RNA helicase 36 0.1 Archaeplastida
AT4G16630 No alias DEA(D/H)-box RNA helicase family protein 0.03 Archaeplastida
Cpa|evm.model.tig00000792.35 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.05 Archaeplastida
Cpa|evm.model.tig00020848.20 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre10.g420900 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.11 Archaeplastida
Cre12.g505200 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.02 Archaeplastida
GSVIVT01009935001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.07 Archaeplastida
Gb_16576 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.06 Archaeplastida
Gb_23737 No alias SSU processome assembly factor (SWA3) 0.06 Archaeplastida
LOC_Os07g43980.1 No alias SSU processome assembly factor (SWA3) 0.04 Archaeplastida
LOC_Os12g29660.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.03 Archaeplastida
MA_6520706g0010 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.02 Archaeplastida
Mp1g19410.1 No alias SSU processome assembly factor (SWA3) 0.07 Archaeplastida
Mp4g20180.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.07 Archaeplastida
Solyc04g081580.4.1 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Arabidopsis... 0.09 Archaeplastida
Solyc10g005520.3.1 No alias SSU processome assembly factor (SWA3) 0.02 Archaeplastida
Solyc10g007550.3.1 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Arabidopsis... 0.04 Archaeplastida
Zm00001e010143_P002 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.08 Archaeplastida
Zm00001e013281_P004 No alias DEAD-box ATP-dependent RNA helicase 10 OS=Oryza sativa... 0.06 Archaeplastida
Zm00001e034676_P001 No alias DEAD-box ATP-dependent RNA helicase 28 OS=Oryza sativa... 0.02 Archaeplastida
Zm00001e035639_P002 No alias SSU processome assembly factor (SWA3) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
MF GO:0008135 translation factor activity, RNA binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0031369 translation initiation factor binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!