AT4G25560 (AtMYB18, MYB18)

Aliases : AtMYB18, MYB18

Description : myb domain protein 18

Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0006247 (SeedPlants) Phylogenetic Tree(s): OG_06_0006247_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G25560
Cluster	HCCA: Cluster_40

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00252990	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
AT1G57560	AtMYB50, MYB50	myb domain protein 50	0.07	Archaeplastida
AT3G46130	ATMYB48-1,...	myb domain protein 48	0.03	Archaeplastida
AT4G17785	MYB39	myb domain protein 39	0.05	Archaeplastida
AT5G10280	ATMYB64, ATMYB92, MYB92	myb domain protein 92	0.03	Archaeplastida
Cre09.g399067	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01000449001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01003662001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01028328001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
Gb_02419	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os01g19330.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os02g49986.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os03g20090.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os03g27090.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os10g33810.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_134436g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_158319g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_278282g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_37851g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_460508g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_6285g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_66255g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
Pp3c16_9970V3.1	No alias	myb domain protein 106	0.02	Archaeplastida
Solyc03g005570.3.1	No alias	transcription factor (MYB)	0.05	Archaeplastida
Solyc03g093930.4.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc03g093940.2.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc04g064540.4.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Solyc05g014290.4.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc05g052850.3.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Solyc10g005240.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e001492_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e007337_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e010546_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e015145_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e019321_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e020140_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e023024_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e023733_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e032298_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e037510_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e041239_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0007165	signal transduction	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	IMP	Interproscan
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009751	response to salicylic acid	IEP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009891	positive regulation of biosynthetic process	None	Extended
BP	GO:0009893	positive regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010017	red or far-red light signaling pathway	None	Extended
BP	GO:0010018	far-red light signaling pathway	IMP	Interproscan
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010218	response to far red light	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010604	positive regulation of macromolecule metabolic process	None	Extended
BP	GO:0010628	positive regulation of gene expression	None	Extended
BP	GO:0014070	response to organic cyclic compound	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031325	positive regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031328	positive regulation of cellular biosynthetic process	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045893	positive regulation of transcription, DNA-templated	IDA	Interproscan
BP	GO:0045935	positive regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0046677	response to antibiotic	None	Extended
BP	GO:0048518	positive regulation of biological process	None	Extended
BP	GO:0048522	positive regulation of cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051254	positive regulation of RNA metabolic process	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0071214	cellular response to abiotic stimulus	None	Extended
BP	GO:0071478	cellular response to radiation	None	Extended
BP	GO:0071482	cellular response to light stimulus	None	Extended
BP	GO:0071489	cellular response to red or far red light	None	Extended
BP	GO:0071490	cellular response to far red light	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0104004	cellular response to environmental stimulus	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902680	positive regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903508	positive regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004536	deoxyribonuclease activity	IEP	Neighborhood
CC	GO:0005667	transcription factor complex	IEP	Neighborhood
CC	GO:0005673	transcription factor TFIIE complex	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006897	endocytosis	IEP	Neighborhood
BP	GO:0009555	pollen development	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0031110	regulation of microtubule polymerization or depolymerization	IEP	Neighborhood
BP	GO:0032386	regulation of intracellular transport	IEP	Neighborhood
BP	GO:0032388	positive regulation of intracellular transport	IEP	Neighborhood
BP	GO:0032886	regulation of microtubule-based process	IEP	Neighborhood
BP	GO:0033157	regulation of intracellular protein transport	IEP	Neighborhood
BP	GO:0044088	regulation of vacuole organization	IEP	Neighborhood
BP	GO:0044090	positive regulation of vacuole organization	IEP	Neighborhood
CC	GO:0044798	nuclear transcription factor complex	IEP	Neighborhood
BP	GO:0048768	root hair cell tip growth	IEP	Neighborhood
BP	GO:0051050	positive regulation of transport	IEP	Neighborhood
BP	GO:0051222	positive regulation of protein transport	IEP	Neighborhood
BP	GO:0051223	regulation of protein transport	IEP	Neighborhood
BP	GO:0055046	microgametogenesis	IEP	Neighborhood
BP	GO:0060341	regulation of cellular localization	IEP	Neighborhood
BP	GO:0070201	regulation of establishment of protein localization	IEP	Neighborhood
BP	GO:0070507	regulation of microtubule cytoskeleton organization	IEP	Neighborhood
BP	GO:0070536	protein K63-linked deubiquitination	IEP	Neighborhood
BP	GO:0071108	protein K48-linked deubiquitination	IEP	Neighborhood
BP	GO:0090087	regulation of peptide transport	IEP	Neighborhood
BP	GO:0090316	positive regulation of intracellular protein transport	IEP	Neighborhood
CC	GO:0090575	RNA polymerase II transcription factor complex	IEP	Neighborhood
BP	GO:0098657	import into cell	IEP	Neighborhood
BP	GO:1903827	regulation of cellular protein localization	IEP	Neighborhood
BP	GO:1903829	positive regulation of cellular protein localization	IEP	Neighborhood
BP	GO:1904951	positive regulation of establishment of protein localization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	69	110
IPR001005	SANT/Myb	12	59

External Links

No external refs found!

AT4G25560 (AtMYB18, MYB18)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation