AT4G25890


Description : 60S acidic ribosomal protein family


Gene families : OG0003127 (Archaeplastida) Phylogenetic Tree(s): OG0003127_tree ,
OG_05_0002232 (LandPlants) Phylogenetic Tree(s): OG_05_0002232_tree ,
OG_06_0002853 (SeedPlants) Phylogenetic Tree(s): OG_06_0002853_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G25890
Cluster HCCA: Cluster_207

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00025p00182570 evm_27.TU.AmTr_v1... Protein biosynthesis.cytosolic ribosome.large subunit... 0.17 Archaeplastida
GSVIVT01010910001 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.25 Archaeplastida
Gb_31564 No alias component RPP3 of LSU proteome component 0.14 Archaeplastida
LOC_Os01g13080.1 No alias component RPP3 of LSU proteome component 0.15 Archaeplastida
LOC_Os06g48780.1 No alias component RPP3 of LSU proteome component 0.1 Archaeplastida
MA_10431312g0020 No alias component RPP3 of LSU proteome component. component... 0.17 Archaeplastida
MA_10435337g0010 No alias component RPP3 of LSU proteome component 0.02 Archaeplastida
Mp3g07010.1 No alias component RPP3 of LSU proteome component 0.2 Archaeplastida
Pp3c21_16160V3.1 No alias 60S acidic ribosomal protein family 0.32 Archaeplastida
Pp3c22_2920V3.1 No alias 60S acidic ribosomal protein family 0.18 Archaeplastida
Smo105823 No alias Protein biosynthesis.cytosolic ribosome.large subunit... 0.07 Archaeplastida
Solyc07g009330.4.1 No alias component RPP3 of LSU proteome component 0.26 Archaeplastida
Zm00001e013180_P001 No alias component RPP3 of LSU proteome component 0.11 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISS Interproscan
CC GO:0005634 nucleus IDA Interproscan
CC GO:0005840 ribosome ISS Interproscan
CC GO:0005886 plasma membrane IDA Interproscan
BP GO:0006414 translational elongation ISS Interproscan
CC GO:0022626 cytosolic ribosome IDA Interproscan
Type GO Term Name Evidence Source
BP GO:0000028 ribosomal small subunit assembly IEP Neighborhood
BP GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000461 endonucleolytic cleavage to generate mature 3'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000462 maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0000469 cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000478 endonucleolytic cleavage involved in rRNA processing IEP Neighborhood
BP GO:0000479 endonucleolytic cleavage of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEP Neighborhood
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0003746 translation elongation factor activity IEP Neighborhood
CC GO:0005618 cell wall IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005774 vacuolar membrane IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005853 eukaryotic translation elongation factor 1 complex IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006407 rRNA export from nucleus IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009507 chloroplast IEP Neighborhood
CC GO:0009536 plastid IEP Neighborhood
BP GO:0009664 plant-type cell wall organization IEP Neighborhood
BP GO:0009735 response to cytokinin IEP Neighborhood
BP GO:0010101 post-embryonic root morphogenesis IEP Neighborhood
BP GO:0010102 lateral root morphogenesis IEP Neighborhood
BP GO:0010252 auxin homeostasis IEP Neighborhood
CC GO:0015934 large ribosomal subunit IEP Neighborhood
CC GO:0015935 small ribosomal subunit IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
BP GO:0016925 protein sumoylation IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
CC GO:0022625 cytosolic large ribosomal subunit IEP Neighborhood
CC GO:0022627 cytosolic small ribosomal subunit IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
CC GO:0030312 external encapsulating structure IEP Neighborhood
BP GO:0030490 maturation of SSU-rRNA IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0030686 90S preribosome IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031125 rRNA 3'-end processing IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034622 cellular protein-containing complex assembly IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0042255 ribosome assembly IEP Neighborhood
BP GO:0042256 mature ribosome assembly IEP Neighborhood
BP GO:0042274 ribosomal small subunit biogenesis IEP Neighborhood
BP GO:0042545 cell wall modification IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0043628 ncRNA 3'-end processing IEP Neighborhood
BP GO:0043933 protein-containing complex subunit organization IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044391 ribosomal subunit IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044437 vacuolar part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045229 external encapsulating structure organization IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0051029 rRNA transport IEP Neighborhood
BP GO:0060688 regulation of morphogenesis of a branching structure IEP Neighborhood
BP GO:0065003 protein-containing complex assembly IEP Neighborhood
BP GO:0071554 cell wall organization or biogenesis IEP Neighborhood
BP GO:0071555 cell wall organization IEP Neighborhood
BP GO:0071669 plant-type cell wall organization or biogenesis IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090502 RNA phosphodiester bond hydrolysis, endonucleolytic IEP Neighborhood
BP GO:0090506 axillary shoot meristem initiation IEP Neighborhood
BP GO:0097064 ncRNA export from nucleus IEP Neighborhood
CC GO:0098588 bounding membrane of organelle IEP Neighborhood
CC GO:0098805 whole membrane IEP Neighborhood
BP GO:1900618 regulation of shoot system morphogenesis IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1905428 regulation of plant organ formation IEP Neighborhood
BP GO:2000032 regulation of secondary shoot formation IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!