AT4G27280

Description : Calcium-binding EF-hand family protein

Gene families : OG0000980 (Archaeplastida) Phylogenetic Tree(s): OG0000980_tree ,
OG_05_0000586 (LandPlants) Phylogenetic Tree(s): OG_05_0000586_tree ,
OG_06_0000395 (SeedPlants) Phylogenetic Tree(s): OG_06_0000395_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G27280
Cluster	HCCA: Cluster_253

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00234p00014000	evm_27.TU.AmTr_v1...	Calcium-binding protein KIC OS=Arabidopsis thaliana	0.07	Archaeplastida
AMTR_s00234p00015090	evm_27.TU.AmTr_v1...	Calcium-binding protein KIC OS=Arabidopsis thaliana	0.04	Archaeplastida
GSVIVT01013226001	No alias	Calcium-binding protein PBP1 OS=Arabidopsis thaliana	0.06	Archaeplastida
GSVIVT01014539001	No alias	Calcium-binding protein KRP1 OS=Arabidopsis thaliana	0.05	Archaeplastida
Gb_17267	No alias	no hits & (original description: none)	0.04	Archaeplastida
Gb_30620	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os01g57470.1	No alias	Calcium-binding protein PBP1 OS=Arabidopsis thaliana...	0.04	Archaeplastida
LOC_Os06g46950.1	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.12	Archaeplastida
MA_25900g0010	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.06	Archaeplastida
MA_25900g0020	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.06	Archaeplastida
MA_48747g0010	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.02	Archaeplastida
Solyc02g079720.1.1	No alias	Calcium-binding protein KRP1 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc07g053050.1.1	No alias	Calcium-binding protein KRP1 OS=Arabidopsis thaliana...	0.16	Archaeplastida
Solyc10g006660.3.1	No alias	Calcium-binding protein KRP1 OS=Arabidopsis thaliana...	0.11	Archaeplastida
Solyc10g006700.1.1	No alias	Calcium-binding protein KRP1 OS=Arabidopsis thaliana...	0.15	Archaeplastida
Solyc10g009340.1.1	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e013045_P001	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.04	Archaeplastida
Zm00001e019618_P001	No alias	Calcium-binding protein PBP1 OS=Arabidopsis thaliana...	0.05	Archaeplastida
Zm00001e025269_P001	No alias	Calcium-binding protein KIC OS=Arabidopsis thaliana...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005509	calcium ion binding	ISS	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005886	plasma membrane	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009611	response to wounding	RCA	Interproscan
BP	GO:0009612	response to mechanical stimulus	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	RCA	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
CC	GO:0016020	membrane	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042493	response to drug	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0080167	response to karrikin	IEP	Interproscan
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	Neighborhood
BP	GO:0000289	nuclear-transcribed mRNA poly(A) tail shortening	IEP	Neighborhood
BP	GO:0000302	response to reactive oxygen species	IEP	Neighborhood
BP	GO:0001101	response to acid chemical	IEP	Neighborhood
BP	GO:0001505	regulation of neurotransmitter levels	IEP	Neighborhood
BP	GO:0002213	defense response to insect	IEP	Neighborhood
BP	GO:0002252	immune effector process	IEP	Neighborhood
BP	GO:0002376	immune system process	IEP	Neighborhood
BP	GO:0002679	respiratory burst involved in defense response	IEP	Neighborhood
BP	GO:0002697	regulation of immune effector process	IEP	Neighborhood
BP	GO:0002831	regulation of response to biotic stimulus	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0003700	DNA-binding transcription factor activity	IEP	Neighborhood
MF	GO:0004527	exonuclease activity	IEP	Neighborhood
MF	GO:0004540	ribonuclease activity	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005634	nucleus	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
BP	GO:0006355	regulation of transcription, DNA-templated	IEP	Neighborhood
BP	GO:0006952	defense response	IEP	Neighborhood
BP	GO:0006955	immune response	IEP	Neighborhood
BP	GO:0006979	response to oxidative stress	IEP	Neighborhood
BP	GO:0007165	signal transduction	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009314	response to radiation	IEP	Neighborhood
BP	GO:0009414	response to water deprivation	IEP	Neighborhood
BP	GO:0009415	response to water	IEP	Neighborhood
BP	GO:0009416	response to light stimulus	IEP	Neighborhood
BP	GO:0009607	response to biotic stimulus	IEP	Neighborhood
BP	GO:0009617	response to bacterium	IEP	Neighborhood
BP	GO:0009620	response to fungus	IEP	Neighborhood
BP	GO:0009642	response to light intensity	IEP	Neighborhood
BP	GO:0009646	response to absence of light	IEP	Neighborhood
BP	GO:0009692	ethylene metabolic process	IEP	Neighborhood
BP	GO:0009693	ethylene biosynthetic process	IEP	Neighborhood
BP	GO:0009694	jasmonic acid metabolic process	IEP	Neighborhood
BP	GO:0009695	jasmonic acid biosynthetic process	IEP	Neighborhood
BP	GO:0009719	response to endogenous stimulus	IEP	Neighborhood
BP	GO:0009723	response to ethylene	IEP	Neighborhood
BP	GO:0009725	response to hormone	IEP	Neighborhood
BP	GO:0009733	response to auxin	IEP	Neighborhood
BP	GO:0009737	response to abscisic acid	IEP	Neighborhood
BP	GO:0009738	abscisic acid-activated signaling pathway	IEP	Neighborhood
BP	GO:0009751	response to salicylic acid	IEP	Neighborhood
BP	GO:0009753	response to jasmonic acid	IEP	Neighborhood
BP	GO:0009755	hormone-mediated signaling pathway	IEP	Neighborhood
BP	GO:0009873	ethylene-activated signaling pathway	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0010035	response to inorganic substance	IEP	Neighborhood
BP	GO:0010468	regulation of gene expression	IEP	Neighborhood
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
BP	GO:0014070	response to organic cyclic compound	IEP	Neighborhood
CC	GO:0015629	actin cytoskeleton	IEP	Neighborhood
BP	GO:0016045	detection of bacterium	IEP	Neighborhood
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	Neighborhood
BP	GO:0019222	regulation of metabolic process	IEP	Neighborhood
BP	GO:0030968	endoplasmic reticulum unfolded protein response	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0032101	regulation of response to external stimulus	IEP	Neighborhood
BP	GO:0033993	response to lipid	IEP	Neighborhood
BP	GO:0034976	response to endoplasmic reticulum stress	IEP	Neighborhood
BP	GO:0035556	intracellular signal transduction	IEP	Neighborhood
BP	GO:0042445	hormone metabolic process	IEP	Neighborhood
BP	GO:0042446	hormone biosynthetic process	IEP	Neighborhood
BP	GO:0042742	defense response to bacterium	IEP	Neighborhood
BP	GO:0043207	response to external biotic stimulus	IEP	Neighborhood
BP	GO:0043449	cellular alkene metabolic process	IEP	Neighborhood
BP	GO:0043450	alkene biosynthetic process	IEP	Neighborhood
BP	GO:0044249	cellular biosynthetic process	IEP	Neighborhood
BP	GO:0045087	innate immune response	IEP	Neighborhood
BP	GO:0045730	respiratory burst	IEP	Neighborhood
BP	GO:0046677	response to antibiotic	IEP	Neighborhood
BP	GO:0048527	lateral root development	IEP	Neighborhood
BP	GO:0048571	long-day photoperiodism	IEP	Neighborhood
BP	GO:0048574	long-day photoperiodism, flowering	IEP	Neighborhood
BP	GO:0050688	regulation of defense response to virus	IEP	Neighborhood
BP	GO:0050691	regulation of defense response to virus by host	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0050794	regulation of cellular process	IEP	Neighborhood
BP	GO:0050832	defense response to fungus	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
BP	GO:0051252	regulation of RNA metabolic process	IEP	Neighborhood
BP	GO:0051592	response to calcium ion	IEP	Neighborhood
BP	GO:0051704	multi-organism process	IEP	Neighborhood
BP	GO:0051707	response to other organism	IEP	Neighborhood
BP	GO:0051865	protein autoubiquitination	IEP	Neighborhood
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0070417	cellular response to cold	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:0080164	regulation of nitric oxide metabolic process	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
BP	GO:0097305	response to alcohol	IEP	Neighborhood
BP	GO:0098542	defense response to other organism	IEP	Neighborhood
BP	GO:0098543	detection of other organism	IEP	Neighborhood
BP	GO:0098581	detection of external biotic stimulus	IEP	Neighborhood
MF	GO:0140110	transcription regulator activity	IEP	Neighborhood
BP	GO:1900673	olefin metabolic process	IEP	Neighborhood
BP	GO:1900674	olefin biosynthetic process	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	Neighborhood
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Neighborhood
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002048	EF_hand_dom	50	103

External Links

No external refs found!

AT4G27280

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation