AT4G27950 (CRF4)

Aliases : CRF4

Description : cytokinin response factor 4

Gene families : OG0000003 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0015386 (LandPlants) Phylogenetic Tree(s): OG_05_0015386_tree ,
OG_06_0015090 (SeedPlants) Phylogenetic Tree(s): OG_06_0015090_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G27950
Cluster	HCCA: Cluster_225

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00010p00194910	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.04	Archaeplastida
AMTR_s00021p00185480	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00023p00044590	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AMTR_s00057p00191330	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.06	Archaeplastida
AMTR_s00077p00141890	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
AT1G12890	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT1G22190	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
AT1G28370	ATERF11, ERF11	ERF domain protein 11	0.03	Archaeplastida
AT1G36060	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT1G46768	RAP2.1	related to AP2 1	0.06	Archaeplastida
AT1G71520	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT2G40220	ABI4, SAN5,...	Integrase-type DNA-binding superfamily protein	0.06	Archaeplastida
AT3G16770	ERF72, EBP, ATEBP, RAP2.3	ethylene-responsive element binding protein	0.03	Archaeplastida
AT3G23230	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
AT4G17500	ERF-1, ATERF-1	ethylene responsive element binding factor 1	0.03	Archaeplastida
AT4G18450	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
AT4G34410	RRTF1	redox responsive transcription factor 1	0.04	Archaeplastida
AT5G07310	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
AT5G18560	PUCHI	Integrase-type DNA-binding superfamily protein	0.05	Archaeplastida
AT5G25390	SHN2	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
AT5G25810	tny	Integrase-type DNA-binding superfamily protein	0.05	Archaeplastida
AT5G47220	ERF2, ATERF2, ATERF-2	ethylene responsive element binding factor 2	0.03	Archaeplastida
AT5G47230	ERF5, ATERF-5, ATERF5	ethylene responsive element binding factor 5	0.04	Archaeplastida
AT5G61890	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
GSVIVT01021146001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
GSVIVT01035098001	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
Gb_02790	No alias	transcription factor (ERF)	0.05	Archaeplastida
Gb_07474	No alias	transcription factor (ERF)	0.03	Archaeplastida
Gb_19118	No alias	transcription factor (ERF)	0.04	Archaeplastida
Gb_34285	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os01g54890.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os01g64790.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os02g45420.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os03g08490.1	No alias	no hits & (original description: none)	0.06	Archaeplastida
LOC_Os03g22170.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os04g46440.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os05g25260.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os05g28350.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os05g29810.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os05g49010.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
LOC_Os06g08340.1	No alias	transcription factor (ERF)	0.05	Archaeplastida
LOC_Os06g09390.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os06g09717.1	No alias	Ethylene-responsive transcription factor ERF018...	0.04	Archaeplastida
LOC_Os06g10780.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os06g11940.1	No alias	Ethylene-responsive transcription factor ERF017...	0.03	Archaeplastida
LOC_Os06g36000.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
LOC_Os07g22770.1	No alias	no description available(sp\|a0a3q7i5y9\|erfc3_sollc : 90.1)	0.05	Archaeplastida
LOC_Os07g42510.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
LOC_Os09g13940.2	No alias	transcription factor (ERF)	0.02	Archaeplastida
LOC_Os09g20350.1	No alias	transcription factor (DREB)	0.03	Archaeplastida
LOC_Os11g06770.2	No alias	transcription factor (ERF)	0.05	Archaeplastida
MA_10274g0010	No alias	transcription factor (ERF)	0.03	Archaeplastida
MA_10427586g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_16778g0010	No alias	transcription factor (DREB)	0.04	Archaeplastida
MA_18403g0020	No alias	Ethylene-responsive transcription factor RAP2-4...	0.05	Archaeplastida
MA_2446g0010	No alias	Ethylene-responsive transcription factor ERF053...	0.06	Archaeplastida
MA_500288g0010	No alias	transcription factor (DREB)	0.02	Archaeplastida
MA_94228g0010	No alias	transcription factor (ERF). SHN-type cutin and suberin...	0.04	Archaeplastida
MA_9812198g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp1g20040.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Mp4g22290.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
Mp5g06970.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Mp7g13760.1	No alias	transcription factor (DREB)	0.02	Archaeplastida
Pp3c10_11910V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c11_10660V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c11_23290V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c16_13260V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c16_13280V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c1_27630V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.03	Archaeplastida
Pp3c27_6030V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c2_15730V3.1	No alias	cytokinin response factor 5	0.03	Archaeplastida
Pp3c5_810V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c6_16660V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c6_20480V3.1	No alias	Integrase-type DNA-binding superfamily protein	0.04	Archaeplastida
Smo38500	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	Archaeplastida
Smo68470	No alias	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.02	Archaeplastida
Smo73155	No alias	Ethylene-responsive transcription factor ERF013...	0.03	Archaeplastida
Solyc02g077360.1.1	No alias	transcription factor (ERF)	0.05	Archaeplastida
Solyc03g093550.1.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc04g071770.3.1	No alias	transcription factor (ERF)	0.03	Archaeplastida
Solyc04g072300.1.1	No alias	Ethylene-responsive transcription factor FZP OS=Oryza...	0.05	Archaeplastida
Solyc04g078640.3.1	No alias	transcription factor (DREB)	0.05	Archaeplastida
Solyc05g052030.1.1	No alias	transcription factor (ERF)	0.05	Archaeplastida
Solyc06g051840.1.1	No alias	transcription factor (ERF)	0.09	Archaeplastida
Solyc06g068360.3.1	No alias	transcription factor (ERF)	0.04	Archaeplastida
Solyc09g089930.3.1	No alias	transcription factor (ERF)	0.02	Archaeplastida
Zm00001e003579_P001	No alias	Ethylene-responsive transcription factor ERF015...	0.02	Archaeplastida
Zm00001e010609_P001	No alias	transcription factor (ERF). transcription factor (ERN1)	0.06	Archaeplastida
Zm00001e014659_P001	No alias	no hits & (original description: none)	0.04	Archaeplastida
Zm00001e023159_P001	No alias	transcription factor (DREB)	0.04	Archaeplastida
Zm00001e026573_P001	No alias	transcription factor (DREB)	0.03	Archaeplastida
Zm00001e032032_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e033537_P001	No alias	transcription factor (ERF)	0.03	Archaeplastida
Zm00001e036130_P001	No alias	transcription factor (DREB)	0.04	Archaeplastida
Zm00001e041539_P001	No alias	transcription factor (ERF)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISS	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0042991	obsolete transcription factor import into nucleus	IDA	Interproscan
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048366	leaf development	IMP	Interproscan
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005102	signaling receptor binding	IEP	Neighborhood
CC	GO:0005615	extracellular space	IEP	Neighborhood
BP	GO:0006473	protein acetylation	IEP	Neighborhood
MF	GO:0008083	growth factor activity	IEP	Neighborhood
BP	GO:0008284	positive regulation of cell proliferation	IEP	Neighborhood
BP	GO:0009742	brassinosteroid mediated signaling pathway	IEP	Neighborhood
BP	GO:0009958	positive gravitropism	IEP	Neighborhood
BP	GO:0010015	root morphogenesis	IEP	Neighborhood
BP	GO:0010086	embryonic root morphogenesis	IEP	Neighborhood
MF	GO:0030545	receptor regulator activity	IEP	Neighborhood
BP	GO:0032880	regulation of protein localization	IEP	Neighborhood
BP	GO:0040034	regulation of development, heterochronic	IEP	Neighborhood
BP	GO:0043401	steroid hormone mediated signaling pathway	IEP	Neighborhood
CC	GO:0044421	extracellular region part	IEP	Neighborhood
MF	GO:0048018	receptor ligand activity	IEP	Neighborhood
BP	GO:0048506	regulation of timing of meristematic phase transition	IEP	Neighborhood
BP	GO:0048510	regulation of timing of transition from vegetative to reproductive phase	IEP	Neighborhood
BP	GO:0048598	embryonic morphogenesis	IEP	Neighborhood
BP	GO:2000012	regulation of auxin polar transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001471	AP2/ERF_dom	117	166

External Links

No external refs found!

AT4G27950 (CRF4)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation