AT4G28110 (MYB41, AtMYB41)

Aliases : MYB41, AtMYB41

Description : myb domain protein 41

Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000006 (SeedPlants) Phylogenetic Tree(s): OG_06_0000006_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G28110
Cluster	HCCA: Cluster_47

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00169630	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00009p00263240	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00024p00225650	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00032p00057800	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.06	Archaeplastida
AMTR_s00032p00221670	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.11	Archaeplastida
AMTR_s00061p00110540	evm_27.TU.AmTr_v1...	Transcription factor MYB80 OS=Oryza sativa subsp. japonica	0.03	Archaeplastida
AMTR_s00076p00157170	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.05	Archaeplastida
AT3G02940	AtMYB107, MYB107	myb domain protein 107	0.03	Archaeplastida
AT3G28470	ATMYB35, TDF1	Duplicated homeodomain-like superfamily protein	0.04	Archaeplastida
AT3G53200	AtMYB27, MYB27	myb domain protein 27	0.02	Archaeplastida
AT4G09460	MYB6, AtMYB6	myb domain protein 6	0.03	Archaeplastida
AT5G15310	ATMIXTA, MYB16, ATMYB16	myb domain protein 16	0.03	Archaeplastida
GSVIVT01000232001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
GSVIVT01004851001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.07	Archaeplastida
GSVIVT01007731001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
GSVIVT01007981001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01008090001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
GSVIVT01008484001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
GSVIVT01009032001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.06	Archaeplastida
GSVIVT01009280001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.07	Archaeplastida
GSVIVT01009566001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
GSVIVT01010006001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
GSVIVT01013126001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.06	Archaeplastida
GSVIVT01014770001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
GSVIVT01015264001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01024353001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.06	Archaeplastida
GSVIVT01028981001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01028984001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01030708001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
GSVIVT01031496001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
GSVIVT01035041001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
GSVIVT01035177001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.06	Archaeplastida
GSVIVT01035332001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01036712001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.06	Archaeplastida
Gb_00379	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_03227	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_05115	No alias	transcription factor (MYB)	0.07	Archaeplastida
Gb_06298	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_13117	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_19333	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_19348	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_24073	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_29520	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_29933	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_32143	No alias	transcription factor (MYB)	0.03	Archaeplastida
Gb_35820	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_39852	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os01g36460.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os02g36890.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os02g51799.1	No alias	transcription factor (MYB)	0.05	Archaeplastida
LOC_Os03g04900.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os04g38740.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os04g45020.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os05g46610.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os06g02250.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os07g44090.3	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os09g24800.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os09g36730.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os11g03440.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os11g35390.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os12g03150.1	No alias	transcription factor (MYB)	0.05	Archaeplastida
LOC_Os12g33070.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_10157944g0010	No alias	transcription factor (MYB)	0.07	Archaeplastida
MA_121533g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_128244g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_158319g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_16413g0010	No alias	transcription factor (MYB)	0.04	Archaeplastida
MA_17672g0010	No alias	transcription factor (MYB)	0.05	Archaeplastida
MA_24271g0020	No alias	transcription factor (MYB)	0.05	Archaeplastida
MA_2797g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_34517g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_3665g0010	No alias	transcription factor (MYB)	0.05	Archaeplastida
MA_37256g0010	No alias	transcription factor (MYB)	0.04	Archaeplastida
MA_37851g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_492415g0010	No alias	no hits & (original description: none)	0.02	Archaeplastida
MA_55123g0010	No alias	transcription factor (MYB)	0.07	Archaeplastida
MA_6277697g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
MA_64405g0010	No alias	transcription factor (MYB)	0.04	Archaeplastida
MA_7105735g0010	No alias	no hits & (original description: none)	0.04	Archaeplastida
MA_9483804g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
Mp1g09420.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Mp1g13010.1	No alias	transcription factor (MYB)	0.01	Archaeplastida
Mp5g14610.1	No alias	transcription factor (MYB)	0.01	Archaeplastida
Pp3c15_7790V3.1	No alias	myb domain protein 55	0.02	Archaeplastida
Pp3c25_3170V3.1	No alias	myb domain protein 16	0.03	Archaeplastida
Pp3c6_9970V3.1	No alias	myb domain protein 106	0.03	Archaeplastida
Pp3c7_23450V3.1	No alias	myb domain protein 106	0.02	Archaeplastida
Pp3c7_23490V3.1	No alias	myb domain protein 106	0.03	Archaeplastida
Smo84195	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
Solyc01g010910.2.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc02g067340.4.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc02g088190.4.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc02g089190.2.1	No alias	transcription factor (MYB)	0.06	Archaeplastida
Solyc02g093740.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc03g059200.2.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
Solyc03g112890.1.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc03g116100.3.1	No alias	transcription factor (MYB)	0.06	Archaeplastida
Solyc04g056310.3.1	No alias	transcription factor (MYB)	0.06	Archaeplastida
Solyc04g074170.3.1	No alias	transcription factor (MYB)	0.1	Archaeplastida
Solyc05g007690.2.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc05g007710.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc05g014290.4.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc05g048830.3.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc05g051550.2.1	No alias	transcription factor (MYB)	0.09	Archaeplastida
Solyc06g074920.3.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc07g053240.3.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Solyc07g054840.4.1	No alias	transcription factor (MYB)	0.12	Archaeplastida
Solyc08g076700.1.1	No alias	transcription factor (MYB)	0.1	Archaeplastida
Solyc08g076710.3.1	No alias	transcription factor (MYB)	0.07	Archaeplastida
Solyc09g090790.3.1	No alias	transcription factor (MYB)	0.06	Archaeplastida
Solyc10g005460.3.1	No alias	transcription factor (MYB)	0.14	Archaeplastida
Solyc10g008700.3.1	No alias	No annotation	0.06	Archaeplastida
Zm00001e001803_P001	No alias	transcription factor (MYB)	0.06	Archaeplastida
Zm00001e003407_P001	No alias	transcription factor (MYB)	0.08	Archaeplastida
Zm00001e004140_P002	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e007085_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e007904_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e009831_P001	No alias	transcription factor (MYB)	0.07	Archaeplastida
Zm00001e010251_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e014925_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e015884_P001	No alias	transcription factor (MYB)	0.05	Archaeplastida
Zm00001e016583_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e017428_P003	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e017470_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e019110_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e020754_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e022450_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e024037_P001	No alias	transcription factor (MYB)	0.05	Archaeplastida
Zm00001e024322_P001	No alias	transcription factor (MYB)	0.07	Archaeplastida
Zm00001e024606_P001	No alias	transcription factor (MYB)	0.05	Archaeplastida
Zm00001e027531_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e029816_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e032347_P001	No alias	transcription factor (MYB)	0.05	Archaeplastida
Zm00001e034072_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e034118_P001	No alias	transcription factor (MYB)	0.06	Archaeplastida
Zm00001e035025_P001	No alias	transcription factor (MYB)	0.08	Archaeplastida
Zm00001e035619_P002	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e035652_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e036684_P002	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e038964_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e039235_P001	No alias	transcription factor (MYB)	0.05	Archaeplastida
Zm00001e040384_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0001101	response to acid chemical	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006109	regulation of carbohydrate metabolic process	None	Extended
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009719	response to endogenous stimulus	None	Extended
BP	GO:0009725	response to hormone	None	Extended
BP	GO:0009737	response to abscisic acid	IEP	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0009890	negative regulation of biosynthetic process	None	Extended
BP	GO:0009892	negative regulation of metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010033	response to organic substance	None	Extended
BP	GO:0010200	response to chitin	IEP	Interproscan
BP	GO:0010243	response to organonitrogen compound	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010558	negative regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0010605	negative regulation of macromolecule metabolic process	None	Extended
BP	GO:0010629	negative regulation of gene expression	None	Extended
BP	GO:0016049	cell growth	IMP	Interproscan
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031324	negative regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0031327	negative regulation of cellular biosynthetic process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0033993	response to lipid	None	Extended
BP	GO:0040007	growth	None	Extended
BP	GO:0042221	response to chemical	None	Extended
BP	GO:0042335	cuticle development	IMP	Interproscan
BP	GO:0042493	response to drug	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045892	negative regulation of transcription, DNA-templated	IMP	Interproscan
BP	GO:0045934	negative regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048523	negative regulation of cellular process	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051172	negative regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0051253	negative regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	IMP	Interproscan
BP	GO:0080091	regulation of raffinose metabolic process	IMP	Interproscan
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097305	response to alcohol	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901698	response to nitrogen compound	None	Extended
BP	GO:1901700	response to oxygen-containing compound	None	Extended
BP	GO:1902679	negative regulation of RNA biosynthetic process	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:1903507	negative regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2000113	negative regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
BP	GO:0006810	transport	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006820	anion transport	IEP	Neighborhood
BP	GO:0006869	lipid transport	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0009561	megagametogenesis	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
BP	GO:0051179	localization	IEP	Neighborhood
BP	GO:0051234	establishment of localization	IEP	Neighborhood
BP	GO:0071702	organic substance transport	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	14	61
IPR001005	SANT/Myb	67	111

External Links

No external refs found!

AT4G28110 (MYB41, AtMYB41)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation