AT4G29630

Description : Cytidine/deoxycytidylate deaminase family protein

Gene families : OG0003511 (Archaeplastida) Phylogenetic Tree(s): OG0003511_tree ,
OG_05_0003294 (LandPlants) Phylogenetic Tree(s): OG_05_0003294_tree ,
OG_06_0003056 (SeedPlants) Phylogenetic Tree(s): OG_06_0003056_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G29630
Cluster	HCCA: Cluster_170

Target	Alias	Description	ECC score	Gene Family Method
AT4G29600	No alias	Cytidine/deoxycytidylate deaminase family protein	0.01	Archaeplastida
LOC_Os01g51540.1	No alias	cytidine deaminase	0.04	Archaeplastida
Pp3c1_4510V3.1	No alias	Cytidine/deoxycytidylate deaminase family protein	0.01	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004126	cytidine deaminase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	ND	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006213	pyrimidine nucleoside metabolic process	None	Extended
BP	GO:0006216	cytidine catabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009116	nucleoside metabolic process	None	Extended
BP	GO:0009119	ribonucleoside metabolic process	None	Extended
BP	GO:0009164	nucleoside catabolic process	None	Extended
BP	GO:0009972	cytidine deamination	ISS	Interproscan
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	None	Extended
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	None	Extended
MF	GO:0019239	deaminase activity	None	Extended
BP	GO:0019439	aromatic compound catabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034655	nucleobase-containing compound catabolic process	None	Extended
BP	GO:0034656	nucleobase-containing small molecule catabolic process	None	Extended
BP	GO:0042454	ribonucleoside catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044270	cellular nitrogen compound catabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044282	small molecule catabolic process	None	Extended
BP	GO:0046087	cytidine metabolic process	None	Extended
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	None	Extended
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	None	Extended
BP	GO:0046135	pyrimidine nucleoside catabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0046700	heterocycle catabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072529	pyrimidine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901361	organic cyclic compound catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
BP	GO:1901657	glycosyl compound metabolic process	None	Extended
BP	GO:1901658	glycosyl compound catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	IEP	Neighborhood
BP	GO:0001944	vasculature development	IEP	Neighborhood
MF	GO:0004034	aldose 1-epimerase activity	IEP	Neighborhood
MF	GO:0004197	cysteine-type endopeptidase activity	IEP	Neighborhood
MF	GO:0004567	beta-mannosidase activity	IEP	Neighborhood
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	Neighborhood
MF	GO:0005365	myo-inositol transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005366	myo-inositol:proton symporter activity	IEP	Neighborhood
CC	GO:0005615	extracellular space	IEP	Neighborhood
BP	GO:0006624	vacuolar protein processing	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009806	lignan metabolic process	IEP	Neighborhood
BP	GO:0009807	lignan biosynthetic process	IEP	Neighborhood
BP	GO:0010214	seed coat development	IEP	Neighborhood
MF	GO:0015166	polyol transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015791	polyol transport	IEP	Neighborhood
BP	GO:0015798	myo-inositol transport	IEP	Neighborhood
BP	GO:0015850	organic hydroxy compound transport	IEP	Neighborhood
MF	GO:0015923	mannosidase activity	IEP	Neighborhood
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
MF	GO:0016985	mannan endo-1,4-beta-mannosidase activity	IEP	Neighborhood
BP	GO:0016998	cell wall macromolecule catabolic process	IEP	Neighborhood
CC	GO:0019005	SCF ubiquitin ligase complex	IEP	Neighborhood
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
BP	GO:0030497	fatty acid elongation	IEP	Neighborhood
CC	GO:0031012	extracellular matrix	IEP	Neighborhood
CC	GO:0031461	cullin-RING ubiquitin ligase complex	IEP	Neighborhood
CC	GO:0044421	extracellular region part	IEP	Neighborhood
MF	GO:0050113	inositol oxygenase activity	IEP	Neighborhood
CC	GO:0071944	cell periphery	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR002125	CMP_dCMP_dom	38	120
IPR013171	Cyd/dCyd_deaminase_Zn-bd	143	223

External Links

No external refs found!

AT4G29630

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation