AT4G29650

Description : Cytidine/deoxycytidylate deaminase family protein

Gene families : OG0003511 (Archaeplastida) Phylogenetic Tree(s): OG0003511_tree ,
OG_05_0003294 (LandPlants) Phylogenetic Tree(s): OG_05_0003294_tree ,
OG_06_0003056 (SeedPlants) Phylogenetic Tree(s): OG_06_0003056_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G29650
Cluster	HCCA: Cluster_170

Target	Alias	Description	ECC score	Gene Family Method	Actions
LOC_Os01g51540.1	No alias	cytidine deaminase	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004126	cytidine deaminase activity	ISS	Interproscan
CC	GO:0005575	cellular_component	ND	Interproscan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008655	pyrimidine-containing compound salvage	ISS	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016810	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	None	Extended
MF	GO:0016814	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
MF	GO:0019239	deaminase activity	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043094	cellular metabolic compound salvage	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072527	pyrimidine-containing compound metabolic process	None	Extended
BP	GO:0072528	pyrimidine-containing compound biosynthetic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0005351	carbohydrate:proton symporter activity	IEP	Neighborhood
MF	GO:0005402	carbohydrate:cation symporter activity	IEP	Neighborhood
CC	GO:0005576	extracellular region	IEP	Neighborhood
BP	GO:0006213	pyrimidine nucleoside metabolic process	IEP	Neighborhood
BP	GO:0006216	cytidine catabolic process	IEP	Neighborhood
BP	GO:0006624	vacuolar protein processing	IEP	Neighborhood
MF	GO:0008234	cysteine-type peptidase activity	IEP	Neighborhood
MF	GO:0008474	palmitoyl-(protein) hydrolase activity	IEP	Neighborhood
BP	GO:0009164	nucleoside catabolic process	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
CC	GO:0009705	plant-type vacuole membrane	IEP	Neighborhood
BP	GO:0009718	anthocyanin-containing compound biosynthetic process	IEP	Neighborhood
BP	GO:0009743	response to carbohydrate	IEP	Neighborhood
BP	GO:0009744	response to sucrose	IEP	Neighborhood
BP	GO:0009812	flavonoid metabolic process	IEP	Neighborhood
BP	GO:0009813	flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0009964	negative regulation of flavonoid biosynthetic process	IEP	Neighborhood
BP	GO:0009972	cytidine deamination	IEP	Neighborhood
BP	GO:0010023	proanthocyanidin biosynthetic process	IEP	Neighborhood
BP	GO:0010224	response to UV-B	IEP	Neighborhood
BP	GO:0010231	maintenance of seed dormancy	IEP	Neighborhood
MF	GO:0015078	proton transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016485	protein processing	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016621	cinnamoyl-CoA reductase activity	IEP	Neighborhood
MF	GO:0016711	flavonoid 3'-monooxygenase activity	IEP	Neighborhood
MF	GO:0016790	thiolester hydrolase activity	IEP	Neighborhood
MF	GO:0019825	oxygen binding	IEP	Neighborhood
MF	GO:0030599	pectinesterase activity	IEP	Neighborhood
CC	GO:0031312	extrinsic component of organelle membrane	IEP	Neighborhood
MF	GO:0033729	anthocyanidin reductase activity	IEP	Neighborhood
BP	GO:0034285	response to disaccharide	IEP	Neighborhood
BP	GO:0034656	nucleobase-containing small molecule catabolic process	IEP	Neighborhood
CC	GO:0042406	extrinsic component of endoplasmic reticulum membrane	IEP	Neighborhood
BP	GO:0042440	pigment metabolic process	IEP	Neighborhood
BP	GO:0042454	ribonucleoside catabolic process	IEP	Neighborhood
MF	GO:0045552	dihydrokaempferol 4-reductase activity	IEP	Neighborhood
BP	GO:0046087	cytidine metabolic process	IEP	Neighborhood
BP	GO:0046131	pyrimidine ribonucleoside metabolic process	IEP	Neighborhood
BP	GO:0046133	pyrimidine ribonucleoside catabolic process	IEP	Neighborhood
BP	GO:0046135	pyrimidine nucleoside catabolic process	IEP	Neighborhood
BP	GO:0046148	pigment biosynthetic process	IEP	Neighborhood
BP	GO:0046283	anthocyanin-containing compound metabolic process	IEP	Neighborhood
MF	GO:0050113	inositol oxygenase activity	IEP	Neighborhood
MF	GO:0050589	leucocyanidin oxygenase activity	IEP	Neighborhood
MF	GO:0052689	carboxylic ester hydrolase activity	IEP	Neighborhood
BP	GO:0072529	pyrimidine-containing compound catabolic process	IEP	Neighborhood
BP	GO:0097437	maintenance of dormancy	IEP	Neighborhood
MF	GO:0098599	palmitoyl hydrolase activity	IEP	Neighborhood
BP	GO:1900384	regulation of flavonol biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR013171	Cyd/dCyd_deaminase_Zn-bd	95	228

External Links

No external refs found!

AT4G29650

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation