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  5. Pp3c26_4890V3.1

Pp3c26_4890V3.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG0006019 (Archaeplastida) Phylogenetic Tree(s): OG0006019_tree ,
OG_05_0007184 (LandPlants) Phylogenetic Tree(s): OG_05_0007184_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c26_4890V3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00010p00244300 evm_27.TU.AmTr_v1... U3 small nucleolar RNA-associated protein 18 homolog... 0.05 Archaeplastida
AT5G14050 No alias Transducin/WD40 repeat-like superfamily protein 0.14 Archaeplastida
Cpa|evm.model.tig00020554.145 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.06 Archaeplastida
Cre06.g255950 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.04 Archaeplastida
GSVIVT01000726001 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.03 Archaeplastida
GSVIVT01003806001 No alias U3 small nucleolar RNA-associated protein 18 homolog... 0.09 Archaeplastida
Gb_28754 No alias SSU processome assembly factor (UTP18) 0.05 Archaeplastida
LOC_Os07g41190.1 No alias SSU processome assembly factor (UTP18) 0.05 Archaeplastida
Mp7g17180.1 No alias SSU processome assembly factor (UTP18) 0.07 Archaeplastida
Solyc10g080180.3.1 No alias SSU processome assembly factor (UTP18) 0.09 Archaeplastida
Zm00001e013263_P001 No alias SSU processome assembly factor (UTP18) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003849 3-deoxy-7-phosphoheptulonate synthase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008652 cellular amino acid biosynthetic process IEP Neighborhood
BP GO:0009072 aromatic amino acid family metabolic process IEP Neighborhood
BP GO:0009073 aromatic amino acid family biosynthetic process IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR001680 WD40_repeat 209 233
No external refs found!