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  5. Pp3c2_11820V3.1

Pp3c2_11820V3.1


Description : histone deacetylase 3


Gene families : OG0001808 (Archaeplastida) Phylogenetic Tree(s): OG0001808_tree ,
OG_05_0001598 (LandPlants) Phylogenetic Tree(s): OG_05_0001598_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c2_11820V3.1
Cluster HCCA: Cluster_244

Target Alias Description ECC score Gene Family Method Actions
AT2G27840 HDA13, HDT04, HDT4 histone deacetylase-related / HD-related 0.05 Archaeplastida
AT3G44750 HDA3, ATHD2A, HDT1, HD2A histone deacetylase 3 0.09 Archaeplastida
Cpa|evm.model.tig00000388.65 No alias Protein modification.protein folding and quality... 0.04 Archaeplastida
MA_118767g0010 No alias histone deacetylase (HDT/HD2) 0.02 Archaeplastida
MA_3905g0020 No alias no hits & (original description: none) 0.02 Archaeplastida
MA_601245g0010 No alias histone deacetylase (HDT/HD2) 0.02 Archaeplastida
Mp5g10240.1 No alias histone deacetylase (HDT/HD2) 0.02 Archaeplastida
Solyc09g009030.4.1 No alias histone deacetylase (HDT/HD2) 0.07 Archaeplastida
Solyc11g066840.3.1 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e018891_P001 No alias histone deacetylase (HDT/HD2) 0.04 Archaeplastida
Zm00001e027707_P004 No alias histone deacetylase (HDT/HD2) 0.05 Archaeplastida
Zm00001e028512_P001 No alias histone deacetylase (HDT/HD2) 0.06 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0030488 tRNA methylation IEP Neighborhood
CC GO:0030684 preribosome IEP Neighborhood
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP Neighborhood
CC GO:0032040 small-subunit processome IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
CC GO:0034708 methyltransferase complex IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
CC GO:0043527 tRNA methyltransferase complex IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
CC GO:1990234 transferase complex IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!