Pp3c2_3220V3.1

Description : Clathrin, heavy chain

Gene families : OG0002049 (Archaeplastida) Phylogenetic Tree(s): OG0002049_tree ,
OG_05_0002345 (LandPlants) Phylogenetic Tree(s): OG_05_0002345_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c2_3220V3.1
Cluster	HCCA: Cluster_186

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00168430	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.07	Archaeplastida
AT3G11130	No alias	Clathrin, heavy chain	0.08	Archaeplastida
Cpa\|evm.model.tig00000042.11	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	Archaeplastida
Cre02.g101400	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.02	Archaeplastida
GSVIVT01024708001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.05	Archaeplastida
GSVIVT01032792001	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.05	Archaeplastida
Gb_33028	No alias	heavy chain of clathrin triskelion	0.11	Archaeplastida
Gb_33029	No alias	Clathrin heavy chain 2 OS=Arabidopsis thaliana...	0.07	Archaeplastida
LOC_Os11g01380.1	No alias	heavy chain of clathrin triskelion	0.07	Archaeplastida
LOC_Os12g01390.1	No alias	heavy chain of clathrin triskelion	0.05	Archaeplastida
MA_47260g0010	No alias	Clathrin heavy chain 2 OS=Oryza sativa subsp. japonica...	0.08	Archaeplastida
MA_5992036g0010	No alias	Clathrin heavy chain 1 OS=Arabidopsis thaliana...	0.02	Archaeplastida
Smo149750	No alias	Vesicle trafficking.clathrin coated vesicle (CCV)...	0.1	Archaeplastida
Solyc05g052510.4.1	No alias	heavy chain of clathrin triskelion	0.11	Archaeplastida
Solyc06g051310.3.1	No alias	heavy chain of clathrin triskelion	0.05	Archaeplastida
Zm00001e009296_P003	No alias	heavy chain of clathrin triskelion	0.09	Archaeplastida
Zm00001e020822_P001	No alias	heavy chain of clathrin triskelion	0.09	Archaeplastida
Zm00001e023940_P002	No alias	heavy chain of clathrin triskelion	0.14	Archaeplastida
Zm00001e039167_P001	No alias	heavy chain of clathrin triskelion	0.1	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005198	structural molecule activity	IEA	Interproscan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	IEA	Interproscan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0015031	protein transport	None	Extended
BP	GO:0015833	peptide transport	None	Extended
BP	GO:0016192	vesicle-mediated transport	IEA	Interproscan
CC	GO:0030117	membrane coat	None	Extended
CC	GO:0030118	clathrin coat	None	Extended
CC	GO:0030120	vesicle coat	None	Extended
CC	GO:0030125	clathrin vesicle coat	None	Extended
CC	GO:0030130	clathrin coat of trans-Golgi network vesicle	IEA	Interproscan
CC	GO:0030132	clathrin coat of coated pit	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
BP	GO:0042886	amide transport	None	Extended
CC	GO:0044422	organelle part	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044431	Golgi apparatus part	None	Extended
CC	GO:0044433	cytoplasmic vesicle part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044446	intracellular organelle part	None	Extended
CC	GO:0044459	plasma membrane part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
CC	GO:0098796	membrane protein complex	None	Extended
CC	GO:0098797	plasma membrane protein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	Neighborhood
MF	GO:0004177	aminopeptidase activity	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005515	protein binding	IEP	Neighborhood
CC	GO:0005852	eukaryotic translation initiation factor 3 complex	IEP	Neighborhood
MF	GO:0008238	exopeptidase activity	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
MF	GO:0016624	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor	IEP	Neighborhood
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Neighborhood
MF	GO:0017016	Ras GTPase binding	IEP	Neighborhood
MF	GO:0019899	enzyme binding	IEP	Neighborhood
MF	GO:0030145	manganese ion binding	IEP	Neighborhood
MF	GO:0031267	small GTPase binding	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0043248	proteasome assembly	IEP	Neighborhood
MF	GO:0051020	GTPase binding	IEP	Neighborhood
MF	GO:0060090	molecular adaptor activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR015348	Clathrin_H-chain_linker_core	344	365
IPR022365	Clathrin_H-chain_propeller_rpt	155	197
IPR000547	Clathrin_H-chain/VPS_repeat	1288	1431
IPR000547	Clathrin_H-chain/VPS_repeat	850	982
IPR000547	Clathrin_H-chain/VPS_repeat	701	840
IPR000547	Clathrin_H-chain/VPS_repeat	1437	1579
IPR000547	Clathrin_H-chain/VPS_repeat	557	690
IPR000547	Clathrin_H-chain/VPS_repeat	1143	1281
IPR000547	Clathrin_H-chain/VPS_repeat	993	1131

External Links

No external refs found!

Pp3c2_3220V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation