AT4G34470 (SK12, ASK12)

Aliases : SK12, ASK12

Description : SKP1-like 12

Gene families : OG0000418 (Archaeplastida) Phylogenetic Tree(s): OG0000418_tree ,
OG_05_0000338 (LandPlants) Phylogenetic Tree(s): OG_05_0000338_tree ,
OG_06_0000762 (SeedPlants) Phylogenetic Tree(s): OG_06_0000762_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G34470
Cluster	HCCA: Cluster_73

Target	Alias	Description	ECC score	Gene Family Method
AT2G03170	ASK14, SK14	SKP1-like 14	0.13	Archaeplastida
AT2G03190	ASK16, SK16	SKP1-like 16	0.05	Archaeplastida
AT2G20160	MEO, ASK17	E3 ubiquitin ligase SCF complex subunit SKP1/ASK1 family protein	0.05	Archaeplastida
AT2G25700	ASK3, SK3	SKP1-like 3	0.06	Archaeplastida
AT3G21830	SK8, ASK8	SKP1-like 8	0.06	Archaeplastida
AT3G21840	ASK7, SK7	SKP1-like 7	0.04	Archaeplastida
AT3G21860	ASK10, SK10	SKP1-like 10	0.06	Archaeplastida
LOC_Os07g05150.1	No alias	target protein binding component SKP1/ASK1 of...	0.11	Archaeplastida
LOC_Os07g05160.1	No alias	target protein binding component SKP1/ASK1 of...	0.07	Archaeplastida
LOC_Os07g05180.1	No alias	target protein binding component SKP1/ASK1 of...	0.11	Archaeplastida
LOC_Os08g28800.1	No alias	target protein binding component SKP1/ASK1 of...	0.04	Archaeplastida
LOC_Os08g28820.1	No alias	target protein binding component SKP1/ASK1 of...	0.11	Archaeplastida
LOC_Os09g10270.1	No alias	target protein binding component SKP1/ASK1 of...	0.05	Archaeplastida
MA_121410g0010	No alias	target protein binding component SKP1/ASK1 of...	0.02	Archaeplastida
MA_99195g0010	No alias	target protein binding component SKP1/ASK1 of...	0.03	Archaeplastida
Smo98727	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	Archaeplastida
Zm00001e011287_P001	No alias	target protein binding component SKP1/ASK1 of...	0.02	Archaeplastida
Zm00001e011288_P001	No alias	target protein binding component SKP1/ASK1 of...	0.03	Archaeplastida
Zm00001e020534_P002	No alias	target protein binding component SKP1/ASK1 of...	0.03	Archaeplastida
Zm00001e042493_P001	No alias	target protein binding component SKP1/ASK1 of...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	ISS	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044248	cellular catabolic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044265	cellular macromolecule catabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0051603	proteolysis involved in cellular protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004044	amidophosphoribosyltransferase activity	IEP	Neighborhood
MF	GO:0004467	long-chain fatty acid-CoA ligase activity	IEP	Neighborhood
MF	GO:0004497	monooxygenase activity	IEP	Neighborhood
MF	GO:0005249	voltage-gated potassium channel activity	IEP	Neighborhood
BP	GO:0006144	purine nucleobase metabolic process	IEP	Neighborhood
BP	GO:0009112	nucleobase metabolic process	IEP	Neighborhood
BP	GO:0009113	purine nucleobase biosynthetic process	IEP	Neighborhood
BP	GO:0009555	pollen development	IEP	Neighborhood
BP	GO:0009698	phenylpropanoid metabolic process	IEP	Neighborhood
BP	GO:0009699	phenylpropanoid biosynthetic process	IEP	Neighborhood
BP	GO:0010152	pollen maturation	IEP	Neighborhood
BP	GO:0010208	pollen wall assembly	IEP	Neighborhood
BP	GO:0010584	pollen exine formation	IEP	Neighborhood
BP	GO:0010927	cellular component assembly involved in morphogenesis	IEP	Neighborhood
MF	GO:0015271	outward rectifier potassium channel activity	IEP	Neighborhood
MF	GO:0015645	fatty acid ligase activity	IEP	Neighborhood
BP	GO:0016043	cellular component organization	IEP	Neighborhood
MF	GO:0016207	4-coumarate-CoA ligase activity	IEP	Neighborhood
MF	GO:0016491	oxidoreductase activity	IEP	Neighborhood
MF	GO:0016620	oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor	IEP	Neighborhood
MF	GO:0016621	cinnamoyl-CoA reductase activity	IEP	Neighborhood
MF	GO:0016705	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen	IEP	Neighborhood
MF	GO:0016713	oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, reduced iron-sulfur protein as one donor, and incorporation of one atom of oxygen	IEP	Neighborhood
MF	GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	IEP	Neighborhood
MF	GO:0016832	aldehyde-lyase activity	IEP	Neighborhood
MF	GO:0016903	oxidoreductase activity, acting on the aldehyde or oxo group of donors	IEP	Neighborhood
MF	GO:0018685	alkane 1-monooxygenase activity	IEP	Neighborhood
BP	GO:0019438	aromatic compound biosynthetic process	IEP	Neighborhood
BP	GO:0022607	cellular component assembly	IEP	Neighborhood
MF	GO:0022843	voltage-gated cation channel activity	IEP	Neighborhood
BP	GO:0030638	polyketide metabolic process	IEP	Neighborhood
BP	GO:0030639	polyketide biosynthetic process	IEP	Neighborhood
MF	GO:0031956	medium-chain fatty acid-CoA ligase activity	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0033866	nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034030	ribonucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0034033	purine nucleoside bisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0035337	fatty-acyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0035384	thioester biosynthetic process	IEP	Neighborhood
BP	GO:0044550	secondary metabolite biosynthetic process	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0046112	nucleobase biosynthetic process	IEP	Neighborhood
BP	GO:0046949	fatty-acyl-CoA biosynthetic process	IEP	Neighborhood
BP	GO:0048229	gametophyte development	IEP	Neighborhood
BP	GO:0048646	anatomical structure formation involved in morphogenesis	IEP	Neighborhood
BP	GO:0051791	medium-chain fatty acid metabolic process	IEP	Neighborhood
BP	GO:0051792	medium-chain fatty acid biosynthetic process	IEP	Neighborhood
BP	GO:0071616	acyl-CoA biosynthetic process	IEP	Neighborhood
BP	GO:0071840	cellular component organization or biogenesis	IEP	Neighborhood
MF	GO:0080019	fatty-acyl-CoA reductase (alcohol-forming) activity	IEP	Neighborhood
BP	GO:0080110	sporopollenin biosynthetic process	IEP	Neighborhood
MF	GO:0090439	tetraketide alpha-pyrone synthase activity	IEP	Neighborhood
BP	GO:1901568	fatty acid derivative metabolic process	IEP	Neighborhood
BP	GO:1901570	fatty acid derivative biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR016072	Skp1_comp_dimer	103	150
IPR016073	Skp1_comp_POZ	4	64

External Links

No external refs found!

AT4G34470 (SK12, ASK12)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation