Pp3c3_27620V3.1

Description : embryo sac development arrest 14

Gene families : OG0005744 (Archaeplastida) Phylogenetic Tree(s): OG0005744_tree ,
OG_05_0007378 (LandPlants) Phylogenetic Tree(s): OG_05_0007378_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c3_27620V3.1
Cluster	HCCA: Cluster_244

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00095p00077940	evm_27.TU.AmTr_v1...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	Archaeplastida
AT3G60360	UTP11, EDA14	embryo sac development arrest 14	0.06	Archaeplastida
Cre13.g573050	No alias	Protein biosynthesis.cytosolic ribosome.small subunit...	0.05	Archaeplastida
Mp7g03440.1	No alias	SSU processome assembly factor (UTP11)	0.08	Archaeplastida
Solyc10g079430.2.1	No alias	SSU processome assembly factor (UTP11)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006364	rRNA processing	IEA	Interproscan
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016072	rRNA metabolic process	None	Extended
CC	GO:0030684	preribosome	None	Extended
CC	GO:0032040	small-subunit processome	IEA	Interproscan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
BP	GO:0001510	RNA methylation	IEP	Neighborhood
CC	GO:0005730	nucleolus	IEP	Neighborhood
BP	GO:0006399	tRNA metabolic process	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
BP	GO:0009451	RNA modification	IEP	Neighborhood
BP	GO:0030488	tRNA methylation	IEP	Neighborhood
CC	GO:0031515	tRNA (m1A) methyltransferase complex	IEP	Neighborhood
BP	GO:0032259	methylation	IEP	Neighborhood
CC	GO:0034708	methyltransferase complex	IEP	Neighborhood
BP	GO:0043414	macromolecule methylation	IEP	Neighborhood
CC	GO:0043527	tRNA methyltransferase complex	IEP	Neighborhood
CC	GO:0044428	nuclear part	IEP	Neighborhood
CC	GO:1990234	transferase complex	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007144	SSU_processome_Utp11	49	260

External Links

No external refs found!