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  5. Pp3c3_29710V3.1

Pp3c3_29710V3.1


Description : RNA polymerase II large subunit


Gene families : OG0009277 (Archaeplastida) Phylogenetic Tree(s): OG0009277_tree ,
OG_05_0009142 (LandPlants) Phylogenetic Tree(s): OG_05_0009142_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c3_29710V3.1
Cluster HCCA: Cluster_31

Target Alias Description ECC score Gene Family Method Actions
Pp3c10_11520V3.1 No alias nuclear RNA polymerase A1 0.04 Archaeplastida
Pp3c17_12280V3.1 No alias nuclear RNA polymerase C1 0.02 Archaeplastida
Pp3c25_15150V3.1 No alias nuclear RNA polymerase A1 0.03 Archaeplastida
Pp3c2_30110V3.1 No alias No annotation 0.06 Archaeplastida
Pp3c3_35870V3.1 No alias nuclear RNA polymerase C1 0.06 Archaeplastida
Pp3c4_14790V3.1 No alias nuclear RNA polymerase C1 0.05 Archaeplastida
Pp3c9_12661V3.1 No alias nuclear RNA polymerase A1 0.05 Archaeplastida
Pp3c9_12700V3.1 No alias nuclear RNA polymerase A1 0.02 Archaeplastida
Pp3c9_17770V3.1 No alias nuclear RNA polymerase C1 0.05 Archaeplastida
Pp3c9_17780V3.1 No alias nuclear RNA polymerase C1 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0006631 fatty acid metabolic process IEP Neighborhood
BP GO:0006633 fatty acid biosynthetic process IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030170 pyridoxal phosphate binding IEP Neighborhood
MF GO:0070279 vitamin B6 binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007081 RNA_pol_Rpb1_5 17 107
No external refs found!