Pp3c3_37780V3.1

Description : DNA-directed RNA polymerase family protein

Gene families : OG0007163 (Archaeplastida) Phylogenetic Tree(s): OG0007163_tree ,
OG_05_0005143 (LandPlants) Phylogenetic Tree(s): OG_05_0005143_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c3_37780V3.1
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
Pp3c11_15720V3.1	No alias	DNA-directed RNA polymerase family protein	0.02	Archaeplastida
Pp3c15_19410V3.1	No alias	DNA-directed RNA polymerase family protein	0.03	Archaeplastida
Pp3c16_10710V3.1	No alias	DNA-directed RNA polymerase family protein	0.04	Archaeplastida
Pp3c16_6070V3.1	No alias	DNA-directed RNA polymerase family protein	0.03	Archaeplastida
Pp3c20_3310V3.1	No alias	No annotation	0.05	Archaeplastida
Pp3c21_8540V3.1	No alias	nuclear RNA polymerase C2	0.03	Archaeplastida
Pp3c24_8970V3.1	No alias	DNA-directed RNA polymerase family protein	0.03	Archaeplastida
Pp3c3_35890V3.1	No alias	DNA-directed RNA polymerase family protein	0.03	Archaeplastida
Pp3c4_14800V3.1	No alias	DNA-directed RNA polymerase family protein	0.04	Archaeplastida
Pp3c4_24950V3.1	No alias	nuclear RNA polymerase C2	0.04	Archaeplastida
Pp3c5_18580V3.1	No alias	nuclear RNA polymerase A2	0.03	Archaeplastida
Pp3c9_12670V3.1	No alias	DNA-directed RNA polymerase family protein	0.04	Archaeplastida
Pp3c9_12710V3.1	No alias	DNA-directed RNA polymerase family protein	0.03	Archaeplastida
Pp3c9_17790V3.1	No alias	DNA-directed RNA polymerase family protein	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003899	DNA-directed 5'-3' RNA polymerase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006351	transcription, DNA-templated	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
MF	GO:0016740	transferase activity	None	Extended
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	None	Extended
MF	GO:0016779	nucleotidyltransferase activity	None	Extended
BP	GO:0018130	heterocycle biosynthetic process	None	Extended
BP	GO:0019438	aromatic compound biosynthetic process	None	Extended
BP	GO:0032774	RNA biosynthetic process	None	Extended
MF	GO:0034062	5'-3' RNA polymerase activity	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0034654	nucleobase-containing compound biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0097659	nucleic acid-templated transcription	None	Extended
MF	GO:0097747	RNA polymerase activity	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901362	organic cyclic compound biosynthetic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	IEP	Neighborhood
MF	GO:0004672	protein kinase activity	IEP	Neighborhood
BP	GO:0005975	carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0006270	DNA replication initiation	IEP	Neighborhood
BP	GO:0006464	cellular protein modification process	IEP	Neighborhood
BP	GO:0006468	protein phosphorylation	IEP	Neighborhood
BP	GO:0006793	phosphorus metabolic process	IEP	Neighborhood
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
BP	GO:0016310	phosphorylation	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
BP	GO:0036211	protein modification process	IEP	Neighborhood
BP	GO:0043412	macromolecule modification	IEP	Neighborhood
MF	GO:0140096	catalytic activity, acting on a protein	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR007641	RNA_pol_Rpb2_7	203	283
IPR007120	DNA-dir_RNAP_su2_dom	2	127

External Links

No external refs found!

Pp3c3_37780V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation