Pp3c4_11630V3.1

Description : proliferating cellular nuclear antigen 1

Gene families : OG0003952 (Archaeplastida) Phylogenetic Tree(s): OG0003952_tree ,
OG_05_0004563 (LandPlants) Phylogenetic Tree(s): OG_05_0004563_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Pp3c4_11630V3.1
Cluster	HCCA: Cluster_6

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00009p00259890	evm_27.TU.AmTr_v1...	Cell cycle.interphase.DNA...	0.03	Archaeplastida
AMTR_s00029p00198200	evm_27.TU.AmTr_v1...	Cell cycle.interphase.DNA...	0.02	Archaeplastida
AT1G07370	ATPCNA1, PCNA1	proliferating cellular nuclear antigen 1	0.04	Archaeplastida
Cpa\|evm.model.tig00020553.141	No alias	Cell cycle.interphase.DNA...	0.02	Archaeplastida
Cre12.g515850	No alias	Cell cycle.interphase.DNA...	0.03	Archaeplastida
GSVIVT01024815001	No alias	Cell cycle.interphase.DNA...	0.05	Archaeplastida
Gb_11143	No alias	sliding clamp protein (PCNA)	0.06	Archaeplastida
LOC_Os02g56130.1	No alias	sliding clamp protein (PCNA)	0.03	Archaeplastida
MA_10434805g0020	No alias	sliding clamp protein (PCNA)	0.02	Archaeplastida
MA_83835g0010	No alias	sliding clamp protein (PCNA)	0.06	Archaeplastida
Mp2g02690.1	No alias	sliding clamp protein (PCNA)	0.03	Archaeplastida
Pp3c12_18160V3.1	No alias	proliferating cellular nuclear antigen 1	0.04	Archaeplastida
Solyc06g076660.3.1	No alias	sliding clamp protein (PCNA)	0.04	Archaeplastida
Zm00001e016159_P001	No alias	sliding clamp protein (PCNA)	0.03	Archaeplastida
Zm00001e023660_P001	No alias	sliding clamp protein (PCNA)	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006275	regulation of DNA replication	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051052	regulation of DNA metabolic process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEP	Neighborhood
MF	GO:0004298	threonine-type endopeptidase activity	IEP	Neighborhood
CC	GO:0005575	cellular_component	IEP	Neighborhood
CC	GO:0005839	proteasome core complex	IEP	Neighborhood
BP	GO:0006325	chromatin organization	IEP	Neighborhood
BP	GO:0006334	nucleosome assembly	IEP	Neighborhood
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	Neighborhood
BP	GO:0007034	vacuolar transport	IEP	Neighborhood
BP	GO:0009057	macromolecule catabolic process	IEP	Neighborhood
MF	GO:0016538	cyclin-dependent protein serine/threonine kinase regulator activity	IEP	Neighborhood
MF	GO:0019207	kinase regulator activity	IEP	Neighborhood
CC	GO:0019773	proteasome core complex, alpha-subunit complex	IEP	Neighborhood
MF	GO:0019887	protein kinase regulator activity	IEP	Neighborhood
BP	GO:0019941	modification-dependent protein catabolic process	IEP	Neighborhood
MF	GO:0030234	enzyme regulator activity	IEP	Neighborhood
CC	GO:0032991	protein-containing complex	IEP	Neighborhood
CC	GO:0032993	protein-DNA complex	IEP	Neighborhood
CC	GO:0033643	host cell part	IEP	Neighborhood
CC	GO:0033646	host intracellular part	IEP	Neighborhood
CC	GO:0033647	host intracellular organelle	IEP	Neighborhood
CC	GO:0033648	host intracellular membrane-bounded organelle	IEP	Neighborhood
BP	GO:0034622	cellular protein-containing complex assembly	IEP	Neighborhood
BP	GO:0034728	nucleosome organization	IEP	Neighborhood
CC	GO:0042025	host cell nucleus	IEP	Neighborhood
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	Neighborhood
BP	GO:0043933	protein-containing complex subunit organization	IEP	Neighborhood
CC	GO:0044217	other organism part	IEP	Neighborhood
BP	GO:0044265	cellular macromolecule catabolic process	IEP	Neighborhood
CC	GO:0044422	organelle part	IEP	Neighborhood
CC	GO:0044427	chromosomal part	IEP	Neighborhood
CC	GO:0044446	intracellular organelle part	IEP	Neighborhood
CC	GO:0044815	DNA packaging complex	IEP	Neighborhood
BP	GO:0065003	protein-containing complex assembly	IEP	Neighborhood
BP	GO:0065004	protein-DNA complex assembly	IEP	Neighborhood
MF	GO:0070003	threonine-type peptidase activity	IEP	Neighborhood
BP	GO:0071824	protein-DNA complex subunit organization	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR022648	Pr_cel_nuc_antig_N	1	37

External Links

No external refs found!

Pp3c4_11630V3.1

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation