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Description : RNA-binding (RRM/RBD/RNP motifs) family protein
Gene families : OG0000444 (Archaeplastida) Phylogenetic Tree(s): OG0000444_tree ,
OG_05_0000471 (LandPlants) Phylogenetic Tree(s): OG_05_0000471_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | HRR: Pp3c4_13300V3.1 | |
| Cluster | HCCA: Cluster_95 |
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00022p00247520 | evm_27.TU.AmTr_v1... | Polyadenylate-binding protein RBP47B OS=Arabidopsis thaliana | 0.06 | Archaeplastida | |
| AT1G47490 | ATRBP47C, RBP47C | RNA-binding protein 47C | 0.03 | Archaeplastida | |
| AT3G19130 | ATRBP47B, RBP47B | RNA-binding protein 47B | 0.04 | Archaeplastida | |
| AT5G54900 | ATRBP45A, RBP45A | RNA-binding protein 45A | 0.09 | Archaeplastida | |
| Gb_20978 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida | |
| Gb_20979 | No alias | Polyadenylate-binding protein RBP47 OS=Nicotiana... | 0.05 | Archaeplastida | |
| LOC_Os02g35950.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida | |
| LOC_Os03g07800.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida | |
| LOC_Os03g37270.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida | |
| LOC_Os04g53440.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida | |
| LOC_Os07g33330.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida | |
| LOC_Os08g09100.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.01 | Archaeplastida | |
| MA_10433660g0010 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida | |
| Smo80061 | No alias | Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia | 0.03 | Archaeplastida | |
| Solyc07g064510.3.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida | |
| Solyc11g065880.2.1 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida | |
| Zm00001e006878_P004 | No alias | no hits & (original description: none) | 0.07 | Archaeplastida | |
| Zm00001e011585_P002 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida | |
| Zm00001e012505_P001 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.02 | Archaeplastida | |
| Zm00001e022780_P001 | No alias | mRNA-binding regulatory factor (RBP45/47) | 0.03 | Archaeplastida |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | Neighborhood |
| MF | GO:0003676 | nucleic acid binding | IEP | Neighborhood |
| MF | GO:0003723 | RNA binding | IEP | Neighborhood |
| MF | GO:0003735 | structural constituent of ribosome | IEP | Neighborhood |
| MF | GO:0003743 | translation initiation factor activity | IEP | Neighborhood |
| MF | GO:0005198 | structural molecule activity | IEP | Neighborhood |
| MF | GO:0005488 | binding | IEP | Neighborhood |
| MF | GO:0005515 | protein binding | IEP | Neighborhood |
| CC | GO:0005575 | cellular_component | IEP | Neighborhood |
| CC | GO:0005840 | ribosome | IEP | Neighborhood |
| CC | GO:0005852 | eukaryotic translation initiation factor 3 complex | IEP | Neighborhood |
| BP | GO:0006412 | translation | IEP | Neighborhood |
| BP | GO:0006413 | translational initiation | IEP | Neighborhood |
| BP | GO:0006518 | peptide metabolic process | IEP | Neighborhood |
| BP | GO:0006606 | protein import into nucleus | IEP | Neighborhood |
| BP | GO:0006807 | nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0006913 | nucleocytoplasmic transport | IEP | Neighborhood |
| MF | GO:0008097 | 5S rRNA binding | IEP | Neighborhood |
| MF | GO:0008135 | translation factor activity, RNA binding | IEP | Neighborhood |
| BP | GO:0008150 | biological_process | IEP | Neighborhood |
| BP | GO:0008152 | metabolic process | IEP | Neighborhood |
| BP | GO:0009058 | biosynthetic process | IEP | Neighborhood |
| BP | GO:0009059 | macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0009987 | cellular process | IEP | Neighborhood |
| BP | GO:0017038 | protein import | IEP | Neighborhood |
| BP | GO:0019538 | protein metabolic process | IEP | Neighborhood |
| MF | GO:0019843 | rRNA binding | IEP | Neighborhood |
| MF | GO:0031369 | translation initiation factor binding | IEP | Neighborhood |
| CC | GO:0032991 | protein-containing complex | IEP | Neighborhood |
| BP | GO:0033365 | protein localization to organelle | IEP | Neighborhood |
| BP | GO:0034504 | protein localization to nucleus | IEP | Neighborhood |
| BP | GO:0034613 | cellular protein localization | IEP | Neighborhood |
| BP | GO:0034641 | cellular nitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:0034645 | cellular macromolecule biosynthetic process | IEP | Neighborhood |
| BP | GO:0043043 | peptide biosynthetic process | IEP | Neighborhood |
| BP | GO:0043170 | macromolecule metabolic process | IEP | Neighborhood |
| CC | GO:0043226 | organelle | IEP | Neighborhood |
| CC | GO:0043228 | non-membrane-bounded organelle | IEP | Neighborhood |
| CC | GO:0043229 | intracellular organelle | IEP | Neighborhood |
| CC | GO:0043232 | intracellular non-membrane-bounded organelle | IEP | Neighborhood |
| BP | GO:0043603 | cellular amide metabolic process | IEP | Neighborhood |
| BP | GO:0043604 | amide biosynthetic process | IEP | Neighborhood |
| BP | GO:0044237 | cellular metabolic process | IEP | Neighborhood |
| BP | GO:0044249 | cellular biosynthetic process | IEP | Neighborhood |
| BP | GO:0044260 | cellular macromolecule metabolic process | IEP | Neighborhood |
| BP | GO:0044267 | cellular protein metabolic process | IEP | Neighborhood |
| BP | GO:0044271 | cellular nitrogen compound biosynthetic process | IEP | Neighborhood |
| CC | GO:0044424 | intracellular part | IEP | Neighborhood |
| CC | GO:0044444 | cytoplasmic part | IEP | Neighborhood |
| CC | GO:0044464 | cell part | IEP | Neighborhood |
| BP | GO:0051169 | nuclear transport | IEP | Neighborhood |
| BP | GO:0051170 | import into nucleus | IEP | Neighborhood |
| MF | GO:0061608 | nuclear import signal receptor activity | IEP | Neighborhood |
| BP | GO:0070727 | cellular macromolecule localization | IEP | Neighborhood |
| BP | GO:0072594 | establishment of protein localization to organelle | IEP | Neighborhood |
| MF | GO:0097159 | organic cyclic compound binding | IEP | Neighborhood |
| MF | GO:0140104 | molecular carrier activity | IEP | Neighborhood |
| MF | GO:0140142 | nucleocytoplasmic carrier activity | IEP | Neighborhood |
| MF | GO:1901363 | heterocyclic compound binding | IEP | Neighborhood |
| BP | GO:1901564 | organonitrogen compound metabolic process | IEP | Neighborhood |
| BP | GO:1901566 | organonitrogen compound biosynthetic process | IEP | Neighborhood |
| BP | GO:1901576 | organic substance biosynthetic process | IEP | Neighborhood |
| CC | GO:1990904 | ribonucleoprotein complex | IEP | Neighborhood |
No InterPro domains available for this sequence
| No external refs found! |