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  5. Pp3c4_21420V3.1

Pp3c4_21420V3.1


Description : Eukaryotic rpb5 RNA polymerase subunit family protein


Gene families : OG0011840 (Archaeplastida) Phylogenetic Tree(s): OG0011840_tree ,
OG_05_0011648 (LandPlants) Phylogenetic Tree(s): OG_05_0011648_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c4_21420V3.1
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Pp3c16_12587V3.1 No alias Eukaryotic rpb5 RNA polymerase subunit family protein 0.03 Archaeplastida
Pp3c1_283V3.1 No alias RNA polymerase II fifth largest subunit, C 0.03 Archaeplastida
Pp3c4_1940V3.1 No alias Eukaryotic rpb5 RNA polymerase subunit family protein 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000723 telomere maintenance IEP Neighborhood
MF GO:0003678 DNA helicase activity IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0032200 telomere organization IEP Neighborhood
BP GO:0033554 cellular response to stress IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051716 cellular response to stimulus IEP Neighborhood
BP GO:0060249 anatomical structure homeostasis IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
InterPro domains Description Start Stop
IPR000783 RNA_pol_subH/Rpb5_C 127 185
No external refs found!