AT4G36290 (CRT1)


Aliases : CRT1

Description : compromised recognition of TCV 1


Gene families : OG0000851 (Archaeplastida) Phylogenetic Tree(s): OG0000851_tree ,
OG_05_0000786 (LandPlants) Phylogenetic Tree(s): OG_05_0000786_tree ,
OG_06_0001754 (SeedPlants) Phylogenetic Tree(s): OG_06_0001754_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT4G36290
Cluster HCCA: Cluster_257

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00085p00139780 evm_27.TU.AmTr_v1... Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
GSVIVT01018849001 No alias Chromatin organisation.DNA methylation.canonical... 0.05 Archaeplastida
Gb_17013 No alias MORC-type auxiliary factor of DNA methylation pathway 0.03 Archaeplastida
Mp1g01480.1 No alias MORC-type auxiliary factor of DNA methylation pathway 0.02 Archaeplastida
Smo61608 No alias Chromatin organisation.DNA methylation.canonical... 0.03 Archaeplastida
Solyc03g097520.3.1 No alias MORC-type auxiliary factor of DNA methylation pathway 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IPI Interproscan
MF GO:0005524 ATP binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005768 endosome IDA Interproscan
BP GO:0009626 plant-type hypersensitive response IMP Interproscan
BP GO:0009816 defense response to bacterium, incompatible interaction IGI Interproscan
BP GO:0031935 regulation of chromatin silencing IMP Interproscan
Type GO Term Name Evidence Source
MF GO:0000049 tRNA binding IEP Neighborhood
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000278 mitotic cell cycle IEP Neighborhood
CC GO:0000418 RNA polymerase IV complex IEP Neighborhood
CC GO:0000419 RNA polymerase V complex IEP Neighborhood
CC GO:0000428 DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0000491 small nucleolar ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0000724 double-strand break repair via homologous recombination IEP Neighborhood
BP GO:0000725 recombinational repair IEP Neighborhood
BP GO:0000726 non-recombinational repair IEP Neighborhood
BP GO:0000919 cell plate assembly IEP Neighborhood
BP GO:0002252 immune effector process IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0003724 RNA helicase activity IEP Neighborhood
MF GO:0003730 mRNA 3'-UTR binding IEP Neighborhood
MF GO:0003887 DNA-directed DNA polymerase activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004386 helicase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
MF GO:0004819 glutamine-tRNA ligase activity IEP Neighborhood
MF GO:0004826 phenylalanine-tRNA ligase activity IEP Neighborhood
MF GO:0004839 ubiquitin activating enzyme activity IEP Neighborhood
CC GO:0005635 nuclear envelope IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005677 chromatin silencing complex IEP Neighborhood
CC GO:0005828 kinetochore microtubule IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005876 spindle microtubule IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006289 nucleotide-excision repair IEP Neighborhood
BP GO:0006302 double-strand break repair IEP Neighborhood
BP GO:0006303 double-strand break repair via nonhomologous end joining IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006349 regulation of gene expression by genetic imprinting IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006378 mRNA polyadenylation IEP Neighborhood
BP GO:0006379 mRNA cleavage IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006405 RNA export from nucleus IEP Neighborhood
BP GO:0006409 tRNA export from nucleus IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
BP GO:0006424 glutamyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006432 phenylalanyl-tRNA aminoacylation IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006471 protein ADP-ribosylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006482 protein demethylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007005 mitochondrion organization IEP Neighborhood
BP GO:0007006 mitochondrial membrane organization IEP Neighborhood
BP GO:0007007 inner mitochondrial membrane organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007015 actin filament organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007020 microtubule nucleation IEP Neighborhood
BP GO:0007021 tubulin complex assembly IEP Neighborhood
BP GO:0007049 cell cycle IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007154 cell communication IEP Neighborhood
BP GO:0007267 cell-cell signaling IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0007389 pattern specification process IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008214 protein dealkylation IEP Neighborhood
MF GO:0008373 sialyltransferase activity IEP Neighborhood
MF GO:0008641 ubiquitin-like modifier activating enzyme activity IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
CC GO:0009328 phenylalanine-tRNA ligase complex IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
BP GO:0009553 embryo sac development IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009560 embryo sac egg cell differentiation IEP Neighborhood
CC GO:0009574 preprophase band IEP Neighborhood
BP GO:0009615 response to virus IEP Neighborhood
BP GO:0009616 virus induced gene silencing IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009640 photomorphogenesis IEP Neighborhood
BP GO:0009756 carbohydrate mediated signaling IEP Neighborhood
BP GO:0009791 post-embryonic development IEP Neighborhood
BP GO:0009799 specification of symmetry IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009855 determination of bilateral symmetry IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009910 negative regulation of flower development IEP Neighborhood
BP GO:0009933 meristem structural organization IEP Neighborhood
BP GO:0009960 endosperm development IEP Neighborhood
BP GO:0010014 meristem initiation IEP Neighborhood
BP GO:0010048 vernalization response IEP Neighborhood
BP GO:0010050 vegetative phase change IEP Neighborhood
BP GO:0010073 meristem maintenance IEP Neighborhood
BP GO:0010162 seed dormancy process IEP Neighborhood
BP GO:0010182 sugar mediated signaling pathway IEP Neighborhood
BP GO:0010212 response to ionizing radiation IEP Neighborhood
BP GO:0010228 vegetative to reproductive phase transition of meristem IEP Neighborhood
BP GO:0010267 production of ta-siRNAs involved in RNA interference IEP Neighborhood
MF GO:0010427 abscisic acid binding IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010608 posttranscriptional regulation of gene expression IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0010639 negative regulation of organelle organization IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
BP GO:0015931 nucleobase-containing compound transport IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016246 RNA interference IEP Neighborhood
BP GO:0016441 posttranscriptional gene silencing IEP Neighborhood
BP GO:0016444 somatic cell DNA recombination IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016567 protein ubiquitination IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016577 histone demethylation IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
MF GO:0016929 SUMO-specific protease activity IEP Neighborhood
MF GO:0017005 3'-tyrosyl-DNA phosphodiesterase activity IEP Neighborhood
CC GO:0017053 transcriptional repressor complex IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019840 isoprenoid binding IEP Neighborhood
BP GO:0019915 lipid storage IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
BP GO:0022607 cellular component assembly IEP Neighborhood
BP GO:0022611 dormancy process IEP Neighborhood
BP GO:0022618 ribonucleoprotein complex assembly IEP Neighborhood
BP GO:0023052 signaling IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
BP GO:0030422 production of siRNA involved in RNA interference IEP Neighborhood
BP GO:0030865 cortical cytoskeleton organization IEP Neighborhood
CC GO:0030880 RNA polymerase complex IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031050 dsRNA fragmentation IEP Neighborhood
BP GO:0031056 regulation of histone modification IEP Neighborhood
BP GO:0031057 negative regulation of histone modification IEP Neighborhood
BP GO:0031060 regulation of histone methylation IEP Neighborhood
BP GO:0031122 cytoplasmic microtubule organization IEP Neighborhood
BP GO:0031123 RNA 3'-end processing IEP Neighborhood
BP GO:0031124 mRNA 3'-end processing IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031497 chromatin assembly IEP Neighborhood
BP GO:0031507 heterochromatin assembly IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032446 protein modification by small protein conjugation IEP Neighborhood
BP GO:0032465 regulation of cytokinesis IEP Neighborhood
BP GO:0032467 positive regulation of cytokinesis IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032886 regulation of microtubule-based process IEP Neighborhood
BP GO:0033169 histone H3-K9 demethylation IEP Neighborhood
MF GO:0033293 monocarboxylic acid binding IEP Neighborhood
MF GO:0034061 DNA polymerase activity IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035065 regulation of histone acetylation IEP Neighborhood
BP GO:0035067 negative regulation of histone acetylation IEP Neighborhood
BP GO:0035194 posttranscriptional gene silencing by RNA IEP Neighborhood
BP GO:0035196 production of miRNAs involved in gene silencing by miRNA IEP Neighborhood
BP GO:0035281 pre-miRNA export from nucleus IEP Neighborhood
BP GO:0035821 modification of morphology or physiology of other organism IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
MF GO:0042562 hormone binding IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
MF GO:0043178 alcohol binding IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0043622 cortical microtubule organization IEP Neighborhood
BP GO:0043631 RNA polyadenylation IEP Neighborhood
BP GO:0043687 post-translational protein modification IEP Neighborhood
BP GO:0044003 modification by symbiont of host morphology or physiology IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
BP GO:0044419 interspecies interaction between organisms IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044430 cytoskeletal part IEP Neighborhood
CC GO:0044451 nucleoplasm part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0045039 protein import into mitochondrial inner membrane IEP Neighborhood
CC GO:0045298 tubulin complex IEP Neighborhood
BP GO:0045787 positive regulation of cell cycle IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045892 negative regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048229 gametophyte development IEP Neighborhood
BP GO:0048367 shoot system development IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048518 positive regulation of biological process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0048522 positive regulation of cellular process IEP Neighborhood
BP GO:0048523 negative regulation of cellular process IEP Neighborhood
BP GO:0048532 anatomical structure arrangement IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048581 negative regulation of post-embryonic development IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048731 system development IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
BP GO:0050657 nucleic acid transport IEP Neighborhood
BP GO:0050658 RNA transport IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0050826 response to freezing IEP Neighborhood
MF GO:0051015 actin filament binding IEP Neighborhood
BP GO:0051026 chiasma assembly IEP Neighborhood
BP GO:0051031 tRNA transport IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051093 negative regulation of developmental process IEP Neighborhood
BP GO:0051129 negative regulation of cellular component organization IEP Neighborhood
BP GO:0051168 nuclear export IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051235 maintenance of location IEP Neighborhood
BP GO:0051236 establishment of RNA localization IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051241 negative regulation of multicellular organismal process IEP Neighborhood
BP GO:0051253 negative regulation of RNA metabolic process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051493 regulation of cytoskeleton organization IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0051570 regulation of histone H3-K9 methylation IEP Neighborhood
BP GO:0051607 defense response to virus IEP Neighborhood
BP GO:0051701 interaction with host IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0051781 positive regulation of cell division IEP Neighborhood
BP GO:0051817 modification of morphology or physiology of other organism involved in symbiotic interaction IEP Neighborhood
BP GO:0052018 modulation by symbiont of RNA levels in host IEP Neighborhood
BP GO:0052249 modulation of RNA levels in other organism involved in symbiotic interaction IEP Neighborhood
CC GO:0055029 nuclear DNA-directed RNA polymerase complex IEP Neighborhood
BP GO:0060236 regulation of mitotic spindle organization IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
BP GO:0070076 histone lysine demethylation IEP Neighborhood
MF GO:0070259 tyrosyl-DNA phosphodiesterase activity IEP Neighborhood
BP GO:0070507 regulation of microtubule cytoskeleton organization IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0070828 heterochromatin organization IEP Neighborhood
BP GO:0070918 production of small RNA involved in gene silencing by RNA IEP Neighborhood
BP GO:0070988 demethylation IEP Neighborhood
BP GO:0071514 genetic imprinting IEP Neighborhood
BP GO:0071704 organic substance metabolic process IEP Neighborhood
BP GO:0071826 ribonucleoprotein complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090068 positive regulation of cell cycle process IEP Neighborhood
BP GO:0090151 establishment of protein localization to mitochondrial membrane IEP Neighborhood
BP GO:0090224 regulation of spindle organization IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:0090501 RNA phosphodiester bond hydrolysis IEP Neighborhood
CC GO:0090568 nuclear transcriptional repressor complex IEP Neighborhood
BP GO:0097064 ncRNA export from nucleus IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:0098586 cellular response to virus IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:0140098 catalytic activity, acting on RNA IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
BP GO:1900109 regulation of histone H3-K9 dimethylation IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901564 organonitrogen compound metabolic process IEP Neighborhood
BP GO:1901983 regulation of protein acetylation IEP Neighborhood
BP GO:1901984 negative regulation of protein acetylation IEP Neighborhood
BP GO:1902679 negative regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903507 negative regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1905268 negative regulation of chromatin organization IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:1990542 mitochondrial transmembrane transport IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
BP GO:2000242 negative regulation of reproductive process IEP Neighborhood
BP GO:2000694 regulation of phragmoplast microtubule organization IEP Neighborhood
BP GO:2000756 regulation of peptidyl-lysine acetylation IEP Neighborhood
BP GO:2000757 negative regulation of peptidyl-lysine acetylation IEP Neighborhood
BP GO:2001251 negative regulation of chromosome organization IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!