AT4G36930 (SPT)

Aliases : SPT

Description : basic helix-loop-helix (bHLH) DNA-binding superfamily protein

Gene families : OG0000092 (Archaeplastida) Phylogenetic Tree(s): OG0000092_tree ,
OG_05_0000040 (LandPlants) Phylogenetic Tree(s): OG_05_0000040_tree ,
OG_06_0000031 (SeedPlants) Phylogenetic Tree(s): OG_06_0000031_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G36930

Target	Alias	Description	ECC score	Gene Family Method
AT1G66470	RHD6	ROOT HAIR DEFECTIVE6	0.01	Archaeplastida
AT5G01305	No alias	No description available	0.03	Archaeplastida
AT5G09750	HEC3	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
AT5G37800	ATRSL1, RSL1	RHD SIX-LIKE 1	0.01	Archaeplastida
GSVIVT01031338001	No alias	External stimuli response.light.red/far red light.PIF...	0.02	Archaeplastida
LOC_Os01g61480.1	No alias	transcription factor (bHLH)	0.01	Archaeplastida
LOC_Os05g46370.1	No alias	transcription factor (bHLH)	0.01	Archaeplastida
LOC_Os09g28210.1	No alias	transcription factor (bHLH)	0.01	Archaeplastida
Pp3c10_19020V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.01	Archaeplastida
Pp3c1_40040V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Pp3c4_4040V3.1	No alias	basic helix-loop-helix (bHLH) DNA-binding superfamily protein	0.02	Archaeplastida
Smo403406	No alias	RNA biosynthesis.transcriptional activation.bHLH...	0.01	Archaeplastida
Solyc02g093280.2.1	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e006917_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e019392_P001	No alias	transcription factor (bHLH)	0.01	Archaeplastida
Zm00001e021883_P001	No alias	transcription factor (bHLH)	0.04	Archaeplastida
Zm00001e029147_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida
Zm00001e032280_P001	No alias	transcription factor (bHLH)	0.02	Archaeplastida
Zm00001e041668_P001	No alias	transcription factor (bHLH)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	IMP	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	TAS	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	IPI	Interproscan
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	IDA	Interproscan
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006950	response to stress	None	Extended
BP	GO:0007623	circadian rhythm	IEP	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009266	response to temperature stimulus	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009409	response to cold	IMP	Interproscan
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009639	response to red or far red light	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009908	flower development	NAS	Interproscan
BP	GO:0010029	regulation of seed germination	None	Extended
BP	GO:0010114	response to red light	IMP	Interproscan
BP	GO:0010154	fruit development	IMP	Interproscan
BP	GO:0010187	negative regulation of seed germination	IMP	Interproscan
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0048367	shoot system development	None	Extended
BP	GO:0048437	floral organ development	None	Extended
BP	GO:0048440	carpel development	IMP	Interproscan
BP	GO:0048511	rhythmic process	None	Extended
BP	GO:0048519	negative regulation of biological process	None	Extended
BP	GO:0048580	regulation of post-embryonic development	None	Extended
BP	GO:0048581	negative regulation of post-embryonic development	None	Extended
BP	GO:0048608	reproductive structure development	None	Extended
BP	GO:0048731	system development	None	Extended
BP	GO:0048827	phyllome development	None	Extended
BP	GO:0048856	anatomical structure development	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051093	negative regulation of developmental process	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051241	negative regulation of multicellular organismal process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0090567	reproductive shoot system development	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:0099402	plant organ development	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1900140	regulation of seedling development	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:2000026	regulation of multicellular organismal development	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
MF	GO:0001882	nucleoside binding	IEP	Neighborhood
MF	GO:0001883	purine nucleoside binding	IEP	Neighborhood
MF	GO:0005384	manganese ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0005525	GTP binding	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
BP	GO:0006006	glucose metabolic process	IEP	Neighborhood
BP	GO:0006007	glucose catabolic process	IEP	Neighborhood
BP	GO:0006828	manganese ion transport	IEP	Neighborhood
BP	GO:0006873	cellular ion homeostasis	IEP	Neighborhood
BP	GO:0006875	cellular metal ion homeostasis	IEP	Neighborhood
MF	GO:0008509	anion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0010043	response to zinc ion	IEP	Neighborhood
MF	GO:0015103	inorganic anion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015691	cadmium ion transport	IEP	Neighborhood
BP	GO:0015692	lead ion transport	IEP	Neighborhood
MF	GO:0019001	guanyl nucleotide binding	IEP	Neighborhood
BP	GO:0019318	hexose metabolic process	IEP	Neighborhood
BP	GO:0019320	hexose catabolic process	IEP	Neighborhood
BP	GO:0019725	cellular homeostasis	IEP	Neighborhood
BP	GO:0030003	cellular cation homeostasis	IEP	Neighborhood
MF	GO:0032549	ribonucleoside binding	IEP	Neighborhood
MF	GO:0032550	purine ribonucleoside binding	IEP	Neighborhood
MF	GO:0032561	guanyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0046365	monosaccharide catabolic process	IEP	Neighborhood
MF	GO:0046873	metal ion transmembrane transporter activity	IEP	Neighborhood
MF	GO:0046915	transition metal ion transmembrane transporter activity	IEP	Neighborhood
BP	GO:0048878	chemical homeostasis	IEP	Neighborhood
BP	GO:0050801	ion homeostasis	IEP	Neighborhood
BP	GO:0055065	metal ion homeostasis	IEP	Neighborhood
BP	GO:0055072	iron ion homeostasis	IEP	Neighborhood
BP	GO:0055076	transition metal ion homeostasis	IEP	Neighborhood
BP	GO:0055080	cation homeostasis	IEP	Neighborhood
BP	GO:0055082	cellular chemical homeostasis	IEP	Neighborhood
BP	GO:0070838	divalent metal ion transport	IEP	Neighborhood
BP	GO:0072511	divalent inorganic cation transport	IEP	Neighborhood
BP	GO:0098771	inorganic ion homeostasis	IEP	Neighborhood
BP	GO:2000377	regulation of reactive oxygen species metabolic process	IEP	Neighborhood
BP	GO:2000379	positive regulation of reactive oxygen species metabolic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR011598	bHLH_dom	201	247

External Links

No external refs found!

AT4G36930 (SPT)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation