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  5. AT1G20500

AT1G20500


Description : AMP-dependent synthetase and ligase family protein


Gene families : OG0000179 (Archaeplastida) Phylogenetic Tree(s): OG0000179_tree ,
OG_05_0000459 (LandPlants) Phylogenetic Tree(s): OG_05_0000459_tree ,
OG_06_0019842 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G20500
Cluster HCCA: Cluster_78

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00076p00189570 evm_27.TU.AmTr_v1... 4-coumarate--CoA ligase-like 7 OS=Arabidopsis thaliana 0.02 Archaeplastida
AT1G51680 4CL1, AT4CL1, 4CL.1 4-coumarate:CoA ligase 1 0.07 Archaeplastida
AT1G65060 4CL3 4-coumarate:CoA ligase 3 0.06 Archaeplastida
AT3G21240 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 0.03 Archaeplastida
AT5G38120 4CL8 AMP-dependent synthetase and ligase family protein 0.04 Archaeplastida
GSVIVT01010497001 No alias Cell wall.sporopollenin.synthesis.ACS5 acyl-CoA synthetase 0.03 Archaeplastida
GSVIVT01024400001 No alias 4-coumarate--CoA ligase 2 OS=Glycine max 0.04 Archaeplastida
GSVIVT01029182001 No alias Secondary metabolism.phenolics.p-coumaroyl-CoA... 0.03 Archaeplastida
Gb_19735 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Gb_41091 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.04 Archaeplastida
LOC_Os01g67540.1 No alias 4-coumarate--CoA ligase-like 6 OS=Oryza sativa subsp.... 0.03 Archaeplastida
LOC_Os02g08100.1 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.05 Archaeplastida
LOC_Os03g04000.1 No alias OPC-8:CoA synthetase 0.04 Archaeplastida
LOC_Os04g24530.1 No alias acyl-CoA synthetase (ACS5) 0.03 Archaeplastida
LOC_Os06g44620.1 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.03 Archaeplastida
LOC_Os08g14760.1 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.02 Archaeplastida
LOC_Os08g34790.1 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.05 Archaeplastida
MA_10432138g0010 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana... 0.03 Archaeplastida
MA_109119g0010 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.03 Archaeplastida
MA_8946476g0010 No alias acyl-CoA synthetase (ACS5) 0.03 Archaeplastida
Mp5g01200.1 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.02 Archaeplastida
Pp3c18_6360V3.1 No alias 4-coumarate:CoA ligase 3 0.02 Archaeplastida
Smo177466 No alias 4-coumarate--CoA ligase-like 5 OS=Arabidopsis thaliana 0.04 Archaeplastida
Solyc02g088710.3.1 No alias acyl-CoA synthetase (ACS5) 0.03 Archaeplastida
Solyc06g068650.4.1 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.03 Archaeplastida
Zm00001e013798_P002 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.08 Archaeplastida
Zm00001e016374_P001 No alias acyl-CoA synthetase (ACS5) 0.03 Archaeplastida
Zm00001e023286_P002 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.02 Archaeplastida
Zm00001e037698_P001 No alias p-coumarate:CoA ligase. 4-coumarate:CoA ligase (4CL) 0.03 Archaeplastida

Type GO Term Name Evidence Source
BP GO:0009698 phenylpropanoid metabolic process ISS Interproscan
MF GO:0016207 4-coumarate-CoA ligase activity ISS Interproscan
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Type GO Term Name Evidence Source
BP GO:0001944 vasculature development IEP Neighborhood
MF GO:0004034 aldose 1-epimerase activity IEP Neighborhood
MF GO:0004126 cytidine deaminase activity IEP Neighborhood
MF GO:0004567 beta-mannosidase activity IEP Neighborhood
MF GO:0004723 calcium-dependent protein serine/threonine phosphatase activity IEP Neighborhood
MF GO:0004842 ubiquitin-protein transferase activity IEP Neighborhood
BP GO:0006213 pyrimidine nucleoside metabolic process IEP Neighborhood
BP GO:0006216 cytidine catabolic process IEP Neighborhood
BP GO:0006857 oligopeptide transport IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0008171 O-methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009056 catabolic process IEP Neighborhood
BP GO:0009116 nucleoside metabolic process IEP Neighborhood
BP GO:0009119 ribonucleoside metabolic process IEP Neighborhood
BP GO:0009164 nucleoside catabolic process IEP Neighborhood
BP GO:0009806 lignan metabolic process IEP Neighborhood
BP GO:0009807 lignan biosynthetic process IEP Neighborhood
BP GO:0009812 flavonoid metabolic process IEP Neighborhood
BP GO:0009813 flavonoid biosynthetic process IEP Neighborhood
BP GO:0009845 seed germination IEP Neighborhood
BP GO:0009972 cytidine deamination IEP Neighborhood
BP GO:0010191 mucilage metabolic process IEP Neighborhood
BP GO:0010192 mucilage biosynthetic process IEP Neighborhood
BP GO:0010214 seed coat development IEP Neighborhood
BP GO:0010253 UDP-rhamnose biosynthetic process IEP Neighborhood
MF GO:0010280 UDP-L-rhamnose synthase activity IEP Neighborhood
MF GO:0010340 carboxyl-O-methyltransferase activity IEP Neighborhood
MF GO:0010341 gibberellin carboxyl-O-methyltransferase activity IEP Neighborhood
MF GO:0010489 UDP-4-keto-6-deoxy-glucose-3,5-epimerase activity IEP Neighborhood
MF GO:0010490 UDP-4-keto-rhamnose-4-keto-reductase activity IEP Neighborhood
MF GO:0015923 mannosidase activity IEP Neighborhood
BP GO:0016129 phytosteroid biosynthetic process IEP Neighborhood
BP GO:0016132 brassinosteroid biosynthetic process IEP Neighborhood
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016618 hydroxypyruvate reductase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0016757 transferase activity, transferring glycosyl groups IEP Neighborhood
MF GO:0016787 hydrolase activity IEP Neighborhood
MF GO:0016810 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds IEP Neighborhood
MF GO:0016814 hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines IEP Neighborhood
MF GO:0016854 racemase and epimerase activity IEP Neighborhood
MF GO:0016857 racemase and epimerase activity, acting on carbohydrates and derivatives IEP Neighborhood
MF GO:0016985 mannan endo-1,4-beta-mannosidase activity IEP Neighborhood
BP GO:0016998 cell wall macromolecule catabolic process IEP Neighborhood
CC GO:0019005 SCF ubiquitin ligase complex IEP Neighborhood
MF GO:0019239 deaminase activity IEP Neighborhood
BP GO:0019439 aromatic compound catabolic process IEP Neighborhood
MF GO:0019787 ubiquitin-like protein transferase activity IEP Neighborhood
MF GO:0019825 oxygen binding IEP Neighborhood
MF GO:0030267 glyoxylate reductase (NADP) activity IEP Neighborhood
CC GO:0031012 extracellular matrix IEP Neighborhood
BP GO:0033478 UDP-rhamnose metabolic process IEP Neighborhood
BP GO:0034655 nucleobase-containing compound catabolic process IEP Neighborhood
BP GO:0034656 nucleobase-containing small molecule catabolic process IEP Neighborhood
MF GO:0042409 caffeoyl-CoA O-methyltransferase activity IEP Neighborhood
BP GO:0042454 ribonucleoside catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044270 cellular nitrogen compound catabolic process IEP Neighborhood
BP GO:0044282 small molecule catabolic process IEP Neighborhood
BP GO:0046087 cytidine metabolic process IEP Neighborhood
BP GO:0046131 pyrimidine ribonucleoside metabolic process IEP Neighborhood
BP GO:0046133 pyrimidine ribonucleoside catabolic process IEP Neighborhood
BP GO:0046135 pyrimidine nucleoside catabolic process IEP Neighborhood
BP GO:0046700 heterocycle catabolic process IEP Neighborhood
BP GO:0048363 mucilage pectin metabolic process IEP Neighborhood
MF GO:0050377 UDP-glucose 4,6-dehydratase activity IEP Neighborhood
BP GO:0051552 flavone metabolic process IEP Neighborhood
BP GO:0051553 flavone biosynthetic process IEP Neighborhood
BP GO:0051554 flavonol metabolic process IEP Neighborhood
BP GO:0051555 flavonol biosynthetic process IEP Neighborhood
BP GO:0055086 nucleobase-containing small molecule metabolic process IEP Neighborhood
CC GO:0071944 cell periphery IEP Neighborhood
BP GO:0072527 pyrimidine-containing compound metabolic process IEP Neighborhood
BP GO:0072529 pyrimidine-containing compound catabolic process IEP Neighborhood
BP GO:0080001 mucilage extrusion from seed coat IEP Neighborhood
BP GO:1900376 regulation of secondary metabolite biosynthetic process IEP Neighborhood
BP GO:1901136 carbohydrate derivative catabolic process IEP Neighborhood
BP GO:1901361 organic cyclic compound catabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
BP GO:1901575 organic substance catabolic process IEP Neighborhood
BP GO:1901657 glycosyl compound metabolic process IEP Neighborhood
BP GO:1901658 glycosyl compound catabolic process IEP Neighborhood
BP GO:2000029 regulation of proanthocyanidin biosynthetic process IEP Neighborhood
BP GO:2000762 regulation of phenylpropanoid metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR025110 AMP-bd_C 461 536
IPR000873 AMP-dep_Synth/Lig 47 452
No external refs found!