1. Home
  2. Species
  3. Physcomitrella patens
  4. Sequence
  5. Pp3c5_1800V3.1

Pp3c5_1800V3.1


Description : histone H2A 10


Gene families : OG0000174 (Archaeplastida) Phylogenetic Tree(s): OG0000174_tree ,
OG_05_0000204 (LandPlants) Phylogenetic Tree(s): OG_05_0000204_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_1800V3.1
Cluster HCCA: Cluster_6

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00057p00215390 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
AMTR_s00058p00158560 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
AMTR_s00115p00128810 evm_27.TU.AmTr_v1... Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
AT1G08880 GAMMA-H2AX,... Histone superfamily protein 0.07 Archaeplastida
AT1G51060 HTA10 histone H2A 10 0.03 Archaeplastida
AT1G54690 GAMMA-H2AX,... gamma histone variant H2AX 0.05 Archaeplastida
AT3G20670 HTA13 histone H2A 13 0.03 Archaeplastida
AT4G27230 HTA2 histone H2A 2 0.02 Archaeplastida
AT5G27670 HTA7 histone H2A 7 0.03 Archaeplastida
AT5G59870 HTA6 histone H2A 6 0.03 Archaeplastida
Cre06.g264750 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre06.g264950 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g265350 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g266700 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g268050 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g268300 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g271350 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g273900 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g274200 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g274800 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
Cre06.g275850 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g276500 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre06.g276950 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre12.g504500 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre12.g504750 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre12.g505550 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre12.g506250 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre13.g570100 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre17.g708550 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre17.g709200 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre17.g710400 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
Cre17.g711700 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre17.g713400 No alias Chromatin organisation.histones.H2A-type histone 0.05 Archaeplastida
Cre17.g714500 No alias Chromatin organisation.histones.H2A-type histone 0.07 Archaeplastida
GSVIVT01002735001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01002746001 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
GSVIVT01011033001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01011034001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
GSVIVT01014580001 No alias Chromatin organisation.histones.H2A-type histone 0.06 Archaeplastida
GSVIVT01025019001 No alias Chromatin organisation.histones.H2A-type histone 0.04 Archaeplastida
GSVIVT01031123001 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Gb_06384 No alias histone (H2A) 0.08 Archaeplastida
Gb_07070 No alias histone (H2A) 0.04 Archaeplastida
Gb_25326 No alias histone (H2A) 0.03 Archaeplastida
Gb_29778 No alias histone (H2A) 0.04 Archaeplastida
Gb_40630 No alias histone (H2A) 0.08 Archaeplastida
LOC_Os03g17100.1 No alias histone (H2A) 0.01 Archaeplastida
LOC_Os05g02300.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os07g36130.1 No alias histone (H2A) 0.02 Archaeplastida
LOC_Os07g36140.1 No alias histone (H2A) 0.03 Archaeplastida
LOC_Os08g33100.1 No alias histone (H2A) 0.05 Archaeplastida
LOC_Os12g25120.1 No alias histone (H2A) 0.02 Archaeplastida
MA_10425800g0010 No alias histone (H2A) 0.02 Archaeplastida
MA_10426943g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_10431879g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_169054g0020 No alias histone (H2A) 0.07 Archaeplastida
MA_213048g0010 No alias histone (H2A) 0.03 Archaeplastida
MA_427046g0010 No alias histone (H2A) 0.04 Archaeplastida
MA_962778g0010 No alias histone (H2A) 0.03 Archaeplastida
Smo166626 No alias Chromatin organisation.histones.H2A-type histone 0.03 Archaeplastida
Smo170948 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Smo73637 No alias Chromatin organisation.histones.H2A-type histone 0.02 Archaeplastida
Smo76653 No alias Chromatin organisation.histones.H2A-type histone 0.01 Archaeplastida
Solyc01g099410.3.1 No alias histone (H2A) 0.02 Archaeplastida
Solyc06g084430.4.1 No alias histone (H2A) 0.06 Archaeplastida
Solyc09g010400.3.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc09g074300.1.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc10g006560.4.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc11g073250.2.1 No alias histone (H2A) 0.03 Archaeplastida
Solyc11g073260.2.1 No alias histone (H2A) 0.05 Archaeplastida
Solyc12g005270.2.1 No alias histone (H2A) 0.06 Archaeplastida
Zm00001e010232_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e010515_P001 No alias histone (H2A) 0.04 Archaeplastida
Zm00001e012144_P001 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e034815_P001 No alias histone (H2A) 0.03 Archaeplastida
Zm00001e035183_P002 No alias histone (H2A) 0.05 Archaeplastida
Zm00001e038465_P002 No alias histone (H2A) 0.02 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEA Interproscan
MF GO:0003677 DNA binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0004175 endopeptidase activity IEP Neighborhood
MF GO:0004298 threonine-type endopeptidase activity IEP Neighborhood
CC GO:0005839 proteasome core complex IEP Neighborhood
BP GO:0006508 proteolysis IEP Neighborhood
MF GO:0008233 peptidase activity IEP Neighborhood
MF GO:0016209 antioxidant activity IEP Neighborhood
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP Neighborhood
MF GO:0019842 vitamin binding IEP Neighborhood
MF GO:0030976 thiamine pyrophosphate binding IEP Neighborhood
MF GO:0048037 cofactor binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051603 proteolysis involved in cellular protein catabolic process IEP Neighborhood
MF GO:0051920 peroxiredoxin activity IEP Neighborhood
MF GO:0070003 threonine-type peptidase activity IEP Neighborhood
MF GO:0070011 peptidase activity, acting on L-amino acid peptides IEP Neighborhood
MF GO:1901681 sulfur compound binding IEP Neighborhood
InterPro domains Description Start Stop
IPR032454 Histone_H2A_C 93 126
IPR007125 Histone_H2A/H2B/H3 12 90
No external refs found!