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  5. Pp3c5_7920V3.1

Pp3c5_7920V3.1


Description : cold shock domain protein 1


Gene families : OG0001543 (Archaeplastida) Phylogenetic Tree(s): OG0001543_tree ,
OG_05_0001927 (LandPlants) Phylogenetic Tree(s): OG_05_0001927_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c5_7920V3.1
Cluster HCCA: Cluster_19

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00206510 evm_27.TU.AmTr_v1... External stimuli response.temperature.Csd... 0.03 Archaeplastida
AT2G17870 ATCSP3, CSP3 cold shock domain protein 3 0.04 Archaeplastida
AT4G38680 ATCSP2, GRP2, CSDP2, CSP2 glycine rich protein 2 0.03 Archaeplastida
LOC_Os02g02870.1 No alias RNA chaperone (CSP). mRNA chaperone (CSD) 0.02 Archaeplastida
Mp1g04040.1 No alias RNA chaperone (CSP). mRNA chaperone (CSD) 0.04 Archaeplastida
Solyc02g083800.4.1 No alias RNA chaperone (CSP). mRNA chaperone (CSD) 0.04 Archaeplastida
Solyc03g033500.4.1 No alias RNA chaperone (CSP). mRNA chaperone (CSD) 0.04 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004427 inorganic diphosphatase activity IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006811 ion transport IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
MF GO:0008168 methyltransferase activity IEP Neighborhood
MF GO:0009678 hydrogen-translocating pyrophosphatase activity IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
BP GO:0015672 monovalent inorganic cation transport IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016741 transferase activity, transferring one-carbon groups IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
BP GO:0034220 ion transmembrane transport IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0098655 cation transmembrane transport IEP Neighborhood
BP GO:0098660 inorganic ion transmembrane transport IEP Neighborhood
BP GO:0098662 inorganic cation transmembrane transport IEP Neighborhood
BP GO:1902600 proton transmembrane transport IEP Neighborhood
InterPro domains Description Start Stop
IPR001878 Znf_CCHC 178 193
IPR001878 Znf_CCHC 141 156
IPR002059 CSP_DNA-bd 15 79
No external refs found!