AT4G38430 (ATROPGEF1, ROPGEF1)

Aliases : ATROPGEF1, ROPGEF1

Description : rho guanyl-nucleotide exchange factor 1

Gene families : OG0000251 (Archaeplastida) Phylogenetic Tree(s): OG0000251_tree ,
OG_05_0000833 (LandPlants) Phylogenetic Tree(s): OG_05_0000833_tree ,
OG_06_0001817 (SeedPlants) Phylogenetic Tree(s): OG_06_0001817_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT4G38430
Cluster	HCCA: Cluster_214

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00001p00182400	evm_27.TU.AmTr_v1...	Multi-process regulation.Rop GTPase regulatory...	0.03	Archaeplastida
AT3G55660	ROPGEF6, ATROPGEF6	ROP (rho of plants) guanine nucleotide exchange factor 6	0.03	Archaeplastida
GSVIVT01023897001	No alias	Multi-process regulation.Rop GTPase regulatory...	0.08	Archaeplastida
LOC_Os01g48410.1	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.02	Archaeplastida
LOC_Os02g47420.3	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.05	Archaeplastida
LOC_Os09g37270.1	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.06	Archaeplastida
MA_2791g0010	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.02	Archaeplastida
MA_79976g0010	No alias	Rho guanine nucleotide exchange factor 8 OS=Arabidopsis...	0.08	Archaeplastida
Pp3c10_9910V3.1	No alias	RHO guanyl-nucleotide exchange factor 7	0.02	Archaeplastida
Pp3c2_28420V3.1	No alias	RHO guanyl-nucleotide exchange factor 7	0.03	Archaeplastida
Pp3c2_4460V3.1	No alias	RHO guanyl-nucleotide exchange factor 7	0.03	Archaeplastida
Solyc01g111930.4.1	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.08	Archaeplastida
Solyc04g082110.4.1	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.05	Archaeplastida
Solyc08g006550.4.1	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.03	Archaeplastida
Zm00001e010284_P002	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.12	Archaeplastida
Zm00001e015569_P002	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.03	Archaeplastida
Zm00001e026925_P001	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.04	Archaeplastida
Zm00001e034952_P003	No alias	PRONE-type RopGEF guanine nucleotide exchange factor	0.06	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	RCA	Interproscan
BP	GO:0000902	cell morphogenesis	None	Extended
BP	GO:0000904	cell morphogenesis involved in differentiation	None	Extended
BP	GO:0001558	regulation of cell growth	None	Extended
BP	GO:0003006	developmental process involved in reproduction	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005085	guanyl-nucleotide exchange factor activity	None	Extended
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	None	Extended
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IDA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0006810	transport	None	Extended
BP	GO:0007389	pattern specification process	RCA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008356	asymmetric cell division	RCA	Interproscan
BP	GO:0008361	regulation of cell size	RCA	Interproscan
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009411	response to UV	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009653	anatomical structure morphogenesis	None	Extended
BP	GO:0009825	multidimensional cell growth	RCA	Interproscan
BP	GO:0009826	unidimensional cell growth	None	Extended
BP	GO:0009860	pollen tube growth	IMP	Interproscan
BP	GO:0009914	hormone transport	None	Extended
BP	GO:0009926	auxin polar transport	RCA	Interproscan
BP	GO:0009932	cell tip growth	RCA	Interproscan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010015	root morphogenesis	RCA	Interproscan
BP	GO:0010075	regulation of meristem growth	RCA	Interproscan
BP	GO:0010769	regulation of cell morphogenesis involved in differentiation	None	Extended
BP	GO:0010817	regulation of hormone levels	RCA	Interproscan
CC	GO:0016020	membrane	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0016049	cell growth	None	Extended
BP	GO:0016051	carbohydrate biosynthetic process	None	Extended
CC	GO:0016324	apical plasma membrane	IDA	Interproscan
MF	GO:0017016	Ras GTPase binding	None	Extended
MF	GO:0017048	Rho GTPase binding	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0022603	regulation of anatomical structure morphogenesis	None	Extended
BP	GO:0022604	regulation of cell morphogenesis	None	Extended
MF	GO:0031267	small GTPase binding	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0032502	developmental process	None	Extended
BP	GO:0032535	regulation of cellular component size	None	Extended
BP	GO:0032989	cellular component morphogenesis	None	Extended
BP	GO:0040007	growth	RCA	Interproscan
BP	GO:0040008	regulation of growth	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043473	pigmentation	None	Extended
BP	GO:0043476	pigment accumulation	None	Extended
BP	GO:0043478	pigment accumulation in response to UV light	None	Extended
BP	GO:0043479	pigment accumulation in tissues in response to UV light	None	Extended
BP	GO:0043480	pigment accumulation in tissues	None	Extended
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	RCA	Interproscan
BP	GO:0043900	regulation of multi-organism process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044425	membrane part	None	Extended
CC	GO:0044459	plasma membrane part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045229	external encapsulating structure organization	None	Extended
BP	GO:0045595	regulation of cell differentiation	None	Extended
BP	GO:0048509	regulation of meristem development	None	Extended
BP	GO:0048588	developmental cell growth	None	Extended
BP	GO:0048589	developmental growth	None	Extended
BP	GO:0048638	regulation of developmental growth	None	Extended
BP	GO:0048767	root hair elongation	RCA	Interproscan
BP	GO:0048869	cellular developmental process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050793	regulation of developmental process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
MF	GO:0051020	GTPase binding	None	Extended
BP	GO:0051128	regulation of cellular component organization	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051239	regulation of multicellular organismal process	None	Extended
BP	GO:0051301	cell division	None	Extended
BP	GO:0051510	regulation of unidimensional cell growth	None	Extended
BP	GO:0060284	regulation of cell development	None	Extended
BP	GO:0060560	developmental growth involved in morphogenesis	None	Extended
BP	GO:0060918	auxin transport	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0065008	regulation of biological quality	None	Extended
BP	GO:0071554	cell wall organization or biogenesis	None	Extended
BP	GO:0071555	cell wall organization	RCA	Interproscan
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
BP	GO:0080092	regulation of pollen tube growth	IGI	Interproscan
BP	GO:0090066	regulation of anatomical structure size	None	Extended
CC	GO:0098590	plasma membrane region	None	Extended
MF	GO:0098772	molecular function regulator	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1905392	plant organ morphogenesis	None	Extended
BP	GO:2000241	regulation of reproductive process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000097	sulfur amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0000226	microtubule cytoskeleton organization	IEP	Neighborhood
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
MF	GO:0001871	pattern binding	IEP	Neighborhood
MF	GO:0001872	(1->3)-beta-D-glucan binding	IEP	Neighborhood
MF	GO:0003676	nucleic acid binding	IEP	Neighborhood
MF	GO:0005516	calmodulin binding	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
CC	GO:0005911	cell-cell junction	IEP	Neighborhood
BP	GO:0006555	methionine metabolic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0006996	organelle organization	IEP	Neighborhood
BP	GO:0007010	cytoskeleton organization	IEP	Neighborhood
BP	GO:0007017	microtubule-based process	IEP	Neighborhood
BP	GO:0007020	microtubule nucleation	IEP	Neighborhood
BP	GO:0008380	RNA splicing	IEP	Neighborhood
MF	GO:0008422	beta-glucosidase activity	IEP	Neighborhood
MF	GO:0008444	CDP-diacylglycerol-glycerol-3-phosphate 3-phosphatidyltransferase activity	IEP	Neighborhood
BP	GO:0009066	aspartate family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009067	aspartate family amino acid biosynthetic process	IEP	Neighborhood
BP	GO:0009086	methionine biosynthetic process	IEP	Neighborhood
CC	GO:0009506	plasmodesma	IEP	Neighborhood
BP	GO:0010492	maintenance of shoot apical meristem identity	IEP	Neighborhood
MF	GO:0015926	glucosidase activity	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016780	phosphotransferase activity, for other substituted phosphate groups	IEP	Neighborhood
MF	GO:0017169	CDP-alcohol phosphatidyltransferase activity	IEP	Neighborhood
CC	GO:0030054	cell junction	IEP	Neighborhood
MF	GO:0030247	polysaccharide binding	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
BP	GO:0032879	regulation of localization	IEP	Neighborhood
BP	GO:0032880	regulation of protein localization	IEP	Neighborhood
MF	GO:0042973	glucan endo-1,3-beta-D-glucosidase activity	IEP	Neighborhood
CC	GO:0045298	tubulin complex	IEP	Neighborhood
MF	GO:0047262	polygalacturonate 4-alpha-galacturonosyltransferase activity	IEP	Neighborhood
BP	GO:0048768	root hair cell tip growth	IEP	Neighborhood
MF	GO:0097159	organic cyclic compound binding	IEP	Neighborhood
MF	GO:1901363	heterocyclic compound binding	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR005512	PRONE_dom	89	456

External Links

No external refs found!

AT4G38430 (ATROPGEF1, ROPGEF1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation