AT5G01860

Description : C2H2 and C2HC zinc fingers superfamily protein

Gene families : OG0000055 (Archaeplastida) Phylogenetic Tree(s): OG0000055_tree ,
OG_05_0000021 (LandPlants) Phylogenetic Tree(s): OG_05_0000021_tree ,
OG_06_0000387 (SeedPlants) Phylogenetic Tree(s): OG_06_0000387_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G01860
Cluster	HCCA: Cluster_27

Target	Alias	Description	ECC score	Gene Family Method
AT5G27880	No alias	C2H2 and C2HC zinc fingers superfamily protein	0.04	Archaeplastida
GSVIVT01009401001	No alias	RNA biosynthesis.transcriptional activation.C2H2 zinc...	0.02	Archaeplastida
Gb_26860	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc05g006310.3.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Solyc10g080600.3.1	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida
Zm00001e013379_P001	No alias	C2H2 zinc finger transcription factor	0.04	Archaeplastida
Zm00001e030783_P001	No alias	C2H2 zinc finger transcription factor	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	TAS	Interproscan
BP	GO:0008150	biological_process	None	Extended
MF	GO:0008270	zinc ion binding	ISS	Interproscan
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	Neighborhood
MF	GO:0008327	methyl-CpG binding	IEP	Neighborhood
BP	GO:0009559	embryo sac central cell differentiation	IEP	Neighborhood
MF	GO:0015386	potassium:proton antiporter activity	IEP	Neighborhood
MF	GO:0022821	potassium ion antiporter activity	IEP	Neighborhood
CC	GO:0043076	megasporocyte nucleus	IEP	Neighborhood
CC	GO:0043078	polar nucleus	IEP	Neighborhood

No InterPro domains available for this sequence

External Links

No external refs found!

AT5G01860

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation