Pp3c9_12670V3.1


Description : DNA-directed RNA polymerase family protein


Gene families : OG0007163 (Archaeplastida) Phylogenetic Tree(s): OG0007163_tree ,
OG_05_0005143 (LandPlants) Phylogenetic Tree(s): OG_05_0005143_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c9_12670V3.1
Cluster HCCA: Cluster_92

Target Alias Description ECC score Gene Family Method Actions
Pp3c15_19410V3.1 No alias DNA-directed RNA polymerase family protein 0.06 Archaeplastida
Pp3c16_10710V3.1 No alias DNA-directed RNA polymerase family protein 0.07 Archaeplastida
Pp3c17_12270V3.1 No alias DNA-directed RNA polymerase family protein 0.05 Archaeplastida
Pp3c20_3310V3.1 No alias No annotation 0.06 Archaeplastida
Pp3c21_8540V3.1 No alias nuclear RNA polymerase C2 0.07 Archaeplastida
Pp3c24_8970V3.1 No alias DNA-directed RNA polymerase family protein 0.06 Archaeplastida
Pp3c25_15140V3.1 No alias DNA-directed RNA polymerase family protein 0.03 Archaeplastida
Pp3c3_37780V3.1 No alias DNA-directed RNA polymerase family protein 0.04 Archaeplastida
Pp3c4_14800V3.1 No alias DNA-directed RNA polymerase family protein 0.03 Archaeplastida
Pp3c5_1420V3.1 No alias nuclear RNA polymerase C2 0.03 Archaeplastida
Pp3c7_1680V3.1 No alias DNA-directed RNA polymerase family protein 0.02 Archaeplastida
Pp3c9_12710V3.1 No alias DNA-directed RNA polymerase family protein 0.07 Archaeplastida
Pp3c9_17790V3.1 No alias DNA-directed RNA polymerase family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEA Interproscan
BP GO:0006351 transcription, DNA-templated IEA Interproscan
Type GO Term Name Evidence Source
BP GO:0000271 polysaccharide biosynthetic process IEP Neighborhood
MF GO:0005507 copper ion binding IEP Neighborhood
BP GO:0005975 carbohydrate metabolic process IEP Neighborhood
BP GO:0005976 polysaccharide metabolic process IEP Neighborhood
BP GO:0005984 disaccharide metabolic process IEP Neighborhood
BP GO:0005991 trehalose metabolic process IEP Neighborhood
BP GO:0005992 trehalose biosynthetic process IEP Neighborhood
BP GO:0006073 cellular glucan metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
BP GO:0009250 glucan biosynthetic process IEP Neighborhood
BP GO:0009311 oligosaccharide metabolic process IEP Neighborhood
BP GO:0009312 oligosaccharide biosynthetic process IEP Neighborhood
BP GO:0016051 carbohydrate biosynthetic process IEP Neighborhood
MF GO:0016651 oxidoreductase activity, acting on NAD(P)H IEP Neighborhood
MF GO:0016759 cellulose synthase activity IEP Neighborhood
MF GO:0016760 cellulose synthase (UDP-forming) activity IEP Neighborhood
BP GO:0030243 cellulose metabolic process IEP Neighborhood
BP GO:0030244 cellulose biosynthetic process IEP Neighborhood
BP GO:0033692 cellular polysaccharide biosynthetic process IEP Neighborhood
BP GO:0034637 cellular carbohydrate biosynthetic process IEP Neighborhood
MF GO:0035251 UDP-glucosyltransferase activity IEP Neighborhood
BP GO:0044042 glucan metabolic process IEP Neighborhood
BP GO:0044262 cellular carbohydrate metabolic process IEP Neighborhood
BP GO:0044264 cellular polysaccharide metabolic process IEP Neighborhood
BP GO:0046351 disaccharide biosynthetic process IEP Neighborhood
MF GO:0046527 glucosyltransferase activity IEP Neighborhood
MF GO:0048038 quinone binding IEP Neighborhood
MF GO:0050662 coenzyme binding IEP Neighborhood
BP GO:0051273 beta-glucan metabolic process IEP Neighborhood
BP GO:0051274 beta-glucan biosynthetic process IEP Neighborhood
MF GO:0051287 NAD binding IEP Neighborhood
InterPro domains Description Start Stop
IPR007641 RNA_pol_Rpb2_7 117 199
IPR007120 DNA-dir_RNAP_su2_dom 1 115
No external refs found!