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  5. Pp3c9_4280V3.1

Pp3c9_4280V3.1


Description : RNA polymerase II transcription mediators


Gene families : OG0002877 (Archaeplastida) Phylogenetic Tree(s): OG0002877_tree ,
OG_05_0005769 (LandPlants) Phylogenetic Tree(s): OG_05_0005769_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Pp3c9_4280V3.1
Cluster HCCA: Cluster_126

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00002p00266990 evm_27.TU.AmTr_v1... RNA biosynthesis.RNA polymerase II-dependent... 0.05 Archaeplastida
AT3G04740 ATMED14, MED14, SWP RNA polymerase II transcription mediators 0.12 Archaeplastida
Cre03.g190550 No alias No description available 0.03 Archaeplastida
GSVIVT01021781001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.08 Archaeplastida
Gb_36567 No alias component MED14 of tail module of MEDIATOR transcription... 0.06 Archaeplastida
LOC_Os08g24420.1 No alias component MED14 of tail module of MEDIATOR transcription... 0.03 Archaeplastida
LOC_Os09g10960.1 No alias component MED14 of tail module of MEDIATOR transcription... 0.03 Archaeplastida
MA_10435964g0030 No alias component MED14 of tail module of MEDIATOR transcription... 0.06 Archaeplastida
MA_8426261g0010 No alias component MED14 of tail module of MEDIATOR transcription... 0.01 Archaeplastida
Mp8g13300.1 No alias component MED14 of tail module of MEDIATOR transcription... 0.07 Archaeplastida
Smo90823 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.07 Archaeplastida
Solyc01g097320.3.1 No alias component MED14 of tail module of MEDIATOR transcription... 0.07 Archaeplastida
Zm00001e009618_P001 No alias component MED14 of tail module of MEDIATOR transcription... 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003743 translation initiation factor activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
CC GO:0005694 chromosome IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006413 translational initiation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
MF GO:0008276 protein methyltransferase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0016278 lysine N-methyltransferase activity IEP Neighborhood
MF GO:0016279 protein-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
MF GO:0018024 histone-lysine N-methyltransferase activity IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
MF GO:0042054 histone methyltransferase activity IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood

No InterPro domains available for this sequence

No external refs found!