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  5. AT5G04810

AT5G04810


Description : pentatricopeptide (PPR) repeat-containing protein


Gene families : OG0006977 (Archaeplastida) Phylogenetic Tree(s): OG0006977_tree ,
OG_05_0005354 (LandPlants) Phylogenetic Tree(s): OG_05_0005354_tree ,
OG_06_0009081 (SeedPlants) Phylogenetic Tree(s): OG_06_0009081_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G04810
Cluster HCCA: Cluster_86

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01034651001 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.07 Archaeplastida
Gb_31760 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.02 Archaeplastida
LOC_Os04g58780.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.04 Archaeplastida
MA_10434757g0010 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 Archaeplastida
MA_70567g0010 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 Archaeplastida
Mp1g25160.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 Archaeplastida
Pp3c16_280V3.1 No alias pentatricopeptide (PPR) repeat-containing protein 0.04 Archaeplastida
Solyc04g009720.1.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.03 Archaeplastida
Solyc11g006680.3.1 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.05 Archaeplastida
Zm00001e041970_P002 No alias Pentatricopeptide repeat-containing protein At5g04810,... 0.05 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0009507 chloroplast IDA Interproscan
CC GO:0009507 chloroplast ISM Interproscan
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Type GO Term Name Evidence Source
BP GO:0000304 response to singlet oxygen IEP Neighborhood
BP GO:0000373 Group II intron splicing IEP Neighborhood
BP GO:0002790 peptide secretion IEP Neighborhood
MF GO:0003841 1-acylglycerol-3-phosphate O-acyltransferase activity IEP Neighborhood
MF GO:0003924 GTPase activity IEP Neighborhood
MF GO:0003984 acetolactate synthase activity IEP Neighborhood
MF GO:0004028 3-chloroallyl aldehyde dehydrogenase activity IEP Neighborhood
MF GO:0004331 fructose-2,6-bisphosphate 2-phosphatase activity IEP Neighborhood
MF GO:0004709 MAP kinase kinase kinase activity IEP Neighborhood
MF GO:0004737 pyruvate decarboxylase activity IEP Neighborhood
MF GO:0005215 transporter activity IEP Neighborhood
MF GO:0005247 voltage-gated chloride channel activity IEP Neighborhood
MF GO:0005253 anion channel activity IEP Neighborhood
MF GO:0005254 chloride channel activity IEP Neighborhood
MF GO:0005388 calcium-transporting ATPase activity IEP Neighborhood
MF GO:0005488 binding IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006000 fructose metabolic process IEP Neighborhood
BP GO:0006002 fructose 6-phosphate metabolic process IEP Neighborhood
BP GO:0006003 fructose 2,6-bisphosphate metabolic process IEP Neighborhood
BP GO:0006351 transcription, DNA-templated IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006400 tRNA modification IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006778 porphyrin-containing compound metabolic process IEP Neighborhood
BP GO:0006779 porphyrin-containing compound biosynthetic process IEP Neighborhood
BP GO:0006783 heme biosynthetic process IEP Neighborhood
BP GO:0006821 chloride transport IEP Neighborhood
BP GO:0006882 cellular zinc ion homeostasis IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007275 multicellular organism development IEP Neighborhood
BP GO:0007584 response to nutrient IEP Neighborhood
BP GO:0008150 biological_process IEP Neighborhood
MF GO:0008308 voltage-gated anion channel activity IEP Neighborhood
MF GO:0008320 protein transmembrane transporter activity IEP Neighborhood
MF GO:0008536 Ran GTPase binding IEP Neighborhood
MF GO:0008565 protein transporter activity IEP Neighborhood
MF GO:0008886 glyceraldehyde-3-phosphate dehydrogenase (NADP+) (non-phosphorylating) activity IEP Neighborhood
BP GO:0009081 branched-chain amino acid metabolic process IEP Neighborhood
BP GO:0009082 branched-chain amino acid biosynthetic process IEP Neighborhood
BP GO:0009306 protein secretion IEP Neighborhood
CC GO:0009526 plastid envelope IEP Neighborhood
CC GO:0009535 chloroplast thylakoid membrane IEP Neighborhood
BP GO:0009555 pollen development IEP Neighborhood
BP GO:0009657 plastid organization IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
BP GO:0009668 plastid membrane organization IEP Neighborhood
CC GO:0009707 chloroplast outer membrane IEP Neighborhood
BP GO:0009740 gibberellic acid mediated signaling pathway IEP Neighborhood
BP GO:0009765 photosynthesis, light harvesting IEP Neighborhood
BP GO:0009790 embryo development IEP Neighborhood
BP GO:0009793 embryo development ending in seed dormancy IEP Neighborhood
BP GO:0009902 chloroplast relocation IEP Neighborhood
CC GO:0009941 chloroplast envelope IEP Neighborhood
BP GO:0009959 negative gravitropism IEP Neighborhood
BP GO:0010027 thylakoid membrane organization IEP Neighborhood
BP GO:0010099 regulation of photomorphogenesis IEP Neighborhood
BP GO:0010100 negative regulation of photomorphogenesis IEP Neighborhood
BP GO:0010109 regulation of photosynthesis IEP Neighborhood
BP GO:0010161 red light signaling pathway IEP Neighborhood
BP GO:0010187 negative regulation of seed germination IEP Neighborhood
BP GO:0010239 chloroplast mRNA processing IEP Neighborhood
MF GO:0010313 phytochrome binding IEP Neighborhood
BP GO:0010343 singlet oxygen-mediated programmed cell death IEP Neighborhood
BP GO:0010422 regulation of brassinosteroid biosynthetic process IEP Neighborhood
BP GO:0010423 negative regulation of brassinosteroid biosynthetic process IEP Neighborhood
BP GO:0010476 gibberellin mediated signaling pathway IEP Neighborhood
BP GO:0010894 negative regulation of steroid biosynthetic process IEP Neighborhood
MF GO:0015108 chloride transmembrane transporter activity IEP Neighborhood
MF GO:0015399 primary active transmembrane transporter activity IEP Neighborhood
MF GO:0015405 P-P-bond-hydrolysis-driven transmembrane transporter activity IEP Neighborhood
MF GO:0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity IEP Neighborhood
BP GO:0015833 peptide transport IEP Neighborhood
BP GO:0015994 chlorophyll metabolic process IEP Neighborhood
BP GO:0015995 chlorophyll biosynthetic process IEP Neighborhood
CC GO:0016020 membrane IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016411 acylglycerol O-acyltransferase activity IEP Neighborhood
MF GO:0016462 pyrophosphatase activity IEP Neighborhood
MF GO:0016695 oxidoreductase activity, acting on hydrogen as donor IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016744 transferase activity, transferring aldehyde or ketonic groups IEP Neighborhood
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP Neighborhood
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP Neighborhood
MF GO:0016819 hydrolase activity, acting on acid anhydrides, in sulfonyl-containing anhydrides IEP Neighborhood
MF GO:0017111 nucleoside-triphosphatase activity IEP Neighborhood
BP GO:0018130 heterocycle biosynthetic process IEP Neighborhood
MF GO:0019203 carbohydrate phosphatase activity IEP Neighborhood
BP GO:0019218 regulation of steroid metabolic process IEP Neighborhood
BP GO:0019438 aromatic compound biosynthetic process IEP Neighborhood
BP GO:0019750 chloroplast localization IEP Neighborhood
MF GO:0019843 rRNA binding IEP Neighborhood
CC GO:0019866 organelle inner membrane IEP Neighborhood
BP GO:0022414 reproductive process IEP Neighborhood
MF GO:0022804 active transmembrane transporter activity IEP Neighborhood
MF GO:0022857 transmembrane transporter activity IEP Neighborhood
MF GO:0022884 macromolecule transmembrane transporter activity IEP Neighborhood
CC GO:0031090 organelle membrane IEP Neighborhood
BP GO:0031425 chloroplast RNA processing IEP Neighborhood
CC GO:0031967 organelle envelope IEP Neighborhood
CC GO:0031969 chloroplast membrane IEP Neighborhood
CC GO:0031975 envelope IEP Neighborhood
BP GO:0032351 negative regulation of hormone metabolic process IEP Neighborhood
BP GO:0032353 negative regulation of hormone biosynthetic process IEP Neighborhood
BP GO:0032501 multicellular organismal process IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032774 RNA biosynthetic process IEP Neighborhood
BP GO:0032940 secretion by cell IEP Neighborhood
BP GO:0033013 tetrapyrrole metabolic process IEP Neighborhood
BP GO:0033014 tetrapyrrole biosynthetic process IEP Neighborhood
BP GO:0033354 chlorophyll cycle IEP Neighborhood
CC GO:0034357 photosynthetic membrane IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0036473 cell death in response to oxidative stress IEP Neighborhood
BP GO:0042168 heme metabolic process IEP Neighborhood
CC GO:0042170 plastid membrane IEP Neighborhood
MF GO:0042171 lysophosphatidic acid acyltransferase activity IEP Neighborhood
MF GO:0042626 ATPase activity, coupled to transmembrane movement of substances IEP Neighborhood
CC GO:0042651 thylakoid membrane IEP Neighborhood
BP GO:0042793 plastid transcription IEP Neighborhood
BP GO:0042886 amide transport IEP Neighborhood
MF GO:0042887 amide transmembrane transporter activity IEP Neighborhood
MF GO:0043492 ATPase activity, coupled to movement of substances IEP Neighborhood
BP GO:0043609 regulation of carbon utilization IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044434 chloroplast part IEP Neighborhood
CC GO:0044435 plastid part IEP Neighborhood
CC GO:0044436 thylakoid part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0045036 protein targeting to chloroplast IEP Neighborhood
BP GO:0045038 protein import into chloroplast thylakoid membrane IEP Neighborhood
BP GO:0045833 negative regulation of lipid metabolic process IEP Neighborhood
BP GO:0045939 negative regulation of steroid metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0046885 regulation of hormone biosynthetic process IEP Neighborhood
BP GO:0046890 regulation of lipid biosynthetic process IEP Neighborhood
BP GO:0046903 secretion IEP Neighborhood
MF GO:0046995 oxidoreductase activity, acting on hydrogen as donor, with other known acceptors IEP Neighborhood
MF GO:0047627 adenylylsulfatase activity IEP Neighborhood
BP GO:0048856 anatomical structure development IEP Neighborhood
MF GO:0050308 sugar-phosphatase activity IEP Neighborhood
MF GO:0050454 coenzyme F420 hydrogenase activity IEP Neighborhood
BP GO:0050810 regulation of steroid biosynthetic process IEP Neighborhood
BP GO:0051055 negative regulation of lipid biosynthetic process IEP Neighborhood
BP GO:0051179 localization IEP Neighborhood
BP GO:0051234 establishment of localization IEP Neighborhood
BP GO:0051341 regulation of oxidoreductase activity IEP Neighborhood
BP GO:0051353 positive regulation of oxidoreductase activity IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051644 plastid localization IEP Neighborhood
BP GO:0051656 establishment of organelle localization IEP Neighborhood
BP GO:0051667 establishment of plastid localization IEP Neighborhood
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Neighborhood
CC GO:0055035 plastid thylakoid membrane IEP Neighborhood
BP GO:0055069 zinc ion homeostasis IEP Neighborhood
BP GO:0055081 anion homeostasis IEP Neighborhood
MF GO:0060089 molecular transducer activity IEP Neighborhood
BP GO:0061024 membrane organization IEP Neighborhood
BP GO:0071491 cellular response to red light IEP Neighborhood
MF GO:0071617 lysophospholipid acyltransferase activity IEP Neighborhood
BP GO:0072596 establishment of protein localization to chloroplast IEP Neighborhood
BP GO:0072598 protein localization to chloroplast IEP Neighborhood
BP GO:0090030 regulation of steroid hormone biosynthetic process IEP Neighborhood
BP GO:0090032 negative regulation of steroid hormone biosynthetic process IEP Neighborhood
BP GO:0090342 regulation of cell aging IEP Neighborhood
MF GO:0090415 7-hydroxymethyl chlorophyll a reductase activity IEP Neighborhood
BP GO:0097468 programmed cell death in response to reactive oxygen species IEP Neighborhood
BP GO:0097659 nucleic acid-templated transcription IEP Neighborhood
BP GO:1901259 chloroplast rRNA processing IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1902551 regulation of catalase activity IEP Neighborhood
BP GO:1902553 positive regulation of catalase activity IEP Neighborhood
MF GO:1904680 peptide transmembrane transporter activity IEP Neighborhood
BP GO:2000468 regulation of peroxidase activity IEP Neighborhood
BP GO:2000470 positive regulation of peroxidase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 416 445
IPR002885 Pentatricopeptide_repeat 314 340
IPR002885 Pentatricopeptide_repeat 451 480
IPR002885 Pentatricopeptide_repeat 728 776
IPR002885 Pentatricopeptide_repeat 622 670
IPR002885 Pentatricopeptide_repeat 482 531
IPR002885 Pentatricopeptide_repeat 343 391
IPR002885 Pentatricopeptide_repeat 788 841
IPR002885 Pentatricopeptide_repeat 541 596
IPR002885 Pentatricopeptide_repeat 689 721
IPR000504 RRM_dom 167 236
No external refs found!