1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT1G21190

AT1G21190


Description : Small nuclear ribonucleoprotein family protein


Gene families : OG0007001 (Archaeplastida) Phylogenetic Tree(s): OG0007001_tree ,
OG_05_0007735 (LandPlants) Phylogenetic Tree(s): OG_05_0007735_tree ,
OG_06_0008806 (SeedPlants) Phylogenetic Tree(s): OG_06_0008806_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT1G21190
Cluster HCCA: Cluster_137

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00030p00090360 evm_27.TU.AmTr_v1... RNA processing.RNA splicing.U6-associated LSm accessory... 0.03 Archaeplastida
Cre16.g662300 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
LOC_Os01g64690.1 No alias component LSm3 of U6-associated LSm accessory... 0.03 Archaeplastida
MA_545800g0010 No alias component LSm3 of U6-associated LSm accessory... 0.02 Archaeplastida
Mp8g11310.1 No alias component LSm3 of U6-associated LSm accessory... 0.04 Archaeplastida
Pp3c24_12260V3.1 No alias Small nuclear ribonucleoprotein family protein 0.02 Archaeplastida
Smo107803 No alias RNA processing.RNA splicing.U6-associated LSm accessory... 0.02 Archaeplastida
Solyc11g005370.2.1 No alias component LSm3 of U6-associated LSm accessory... 0.03 Archaeplastida

Type GO Term Name Evidence Source
CC GO:0005634 nucleus ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
CC GO:0005732 small nucleolar ribonucleoprotein complex ISS Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0000036 acyl carrier activity IEP Neighborhood
BP GO:0000413 protein peptidyl-prolyl isomerization IEP Neighborhood
CC GO:0000785 chromatin IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP Neighborhood
MF GO:0004402 histone acetyltransferase activity IEP Neighborhood
MF GO:0005509 calcium ion binding IEP Neighborhood
BP GO:0005513 detection of calcium ion IEP Neighborhood
MF GO:0005527 macrolide binding IEP Neighborhood
MF GO:0005528 FK506 binding IEP Neighborhood
CC GO:0005737 cytoplasm IEP Neighborhood
CC GO:0005770 late endosome IEP Neighborhood
CC GO:0005771 multivesicular body IEP Neighborhood
CC GO:0005795 Golgi stack IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005885 Arp2/3 protein complex IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006928 movement of cell or subcellular component IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
MF GO:0008080 N-acetyltransferase activity IEP Neighborhood
BP GO:0008154 actin polymerization or depolymerization IEP Neighborhood
BP GO:0009593 detection of chemical stimulus IEP Neighborhood
BP GO:0009612 response to mechanical stimulus IEP Neighborhood
CC GO:0016272 prefoldin complex IEP Neighborhood
CC GO:0016592 mediator complex IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0016859 cis-trans isomerase activity IEP Neighborhood
BP GO:0018208 peptidyl-proline modification IEP Neighborhood
BP GO:0019722 calcium-mediated signaling IEP Neighborhood
BP GO:0019932 second-messenger-mediated signaling IEP Neighborhood
BP GO:0030029 actin filament-based process IEP Neighborhood
BP GO:0030036 actin cytoskeleton organization IEP Neighborhood
BP GO:0030041 actin filament polymerization IEP Neighborhood
BP GO:0030048 actin filament-based movement IEP Neighborhood
MF GO:0030527 structural constituent of chromatin IEP Neighborhood
BP GO:0030865 cortical cytoskeleton organization IEP Neighborhood
BP GO:0031122 cytoplasmic microtubule organization IEP Neighborhood
MF GO:0034212 peptide N-acetyltransferase activity IEP Neighborhood
BP GO:0035556 intracellular signal transduction IEP Neighborhood
BP GO:0043622 cortical microtubule organization IEP Neighborhood
MF GO:0044620 ACP phosphopantetheine attachment site binding IEP Neighborhood
MF GO:0051192 prosthetic group binding IEP Neighborhood
BP GO:0051258 protein polymerization IEP Neighborhood
BP GO:0051592 response to calcium ion IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051645 Golgi localization IEP Neighborhood
BP GO:0051646 mitochondrion localization IEP Neighborhood
BP GO:0060151 peroxisome localization IEP Neighborhood
MF GO:0061733 peptide-lysine-N-acetyltransferase activity IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
MF GO:0140104 molecular carrier activity IEP Neighborhood
InterPro domains Description Start Stop
IPR001163 LSM_dom_euk/arc 16 92
No external refs found!