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  5. MA_102917g0010

MA_102917g0010


Description : component UPF3 of RNA quality control Exon Junction complex


Gene families : OG0002934 (Archaeplastida) Phylogenetic Tree(s): OG0002934_tree ,
OG_05_0002802 (LandPlants) Phylogenetic Tree(s): OG_05_0002802_tree ,
OG_06_0003003 (SeedPlants) Phylogenetic Tree(s): OG_06_0003003_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_102917g0010
Cluster HCCA: Cluster_393

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00071p00188270 evm_27.TU.AmTr_v1... RNA processing.RNA quality control Exon Junction complex... 0.05 Archaeplastida
AT1G33980 ATUPF3, UPF3 Smg-4/UPF3 family protein 0.04 Archaeplastida
GSVIVT01023232001 No alias RNA processing.RNA quality control Exon Junction complex... 0.09 Archaeplastida
GSVIVT01034834001 No alias RNA processing.RNA quality control Exon Junction complex... 0.03 Archaeplastida
Gb_21093 No alias component UPF3 of RNA quality control Exon Junction complex 0.03 Archaeplastida
Gb_30577 No alias component UPF3 of RNA quality control Exon Junction complex 0.03 Archaeplastida
LOC_Os04g35920.2 No alias component UPF3 of RNA quality control Exon Junction complex 0.06 Archaeplastida
Pp3c12_4230V3.1 No alias Smg-4/UPF3 family protein 0.05 Archaeplastida
Pp3c4_15540V3.1 No alias Smg-4/UPF3 family protein 0.03 Archaeplastida
Solyc01g103420.4.1 No alias component UPF3 of RNA quality control Exon Junction complex 0.06 Archaeplastida
Solyc10g044450.3.1 No alias component UPF3 of RNA quality control Exon Junction complex 0.03 Archaeplastida
Zm00001e008047_P001 No alias component UPF3 of RNA quality control Exon Junction complex 0.06 Archaeplastida
Zm00001e040916_P004 No alias component UPF3 of RNA quality control Exon Junction complex 0.07 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0004197 cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0004198 calcium-dependent cysteine-type endopeptidase activity IEP Neighborhood
MF GO:0005085 guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005086 ARF guanyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006812 cation transport IEP Neighborhood
BP GO:0006813 potassium ion transport IEP Neighborhood
BP GO:0006914 autophagy IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008324 cation transmembrane transporter activity IEP Neighborhood
BP GO:0009966 regulation of signal transduction IEP Neighborhood
BP GO:0010646 regulation of cell communication IEP Neighborhood
MF GO:0015075 ion transmembrane transporter activity IEP Neighborhood
MF GO:0015079 potassium ion transmembrane transporter activity IEP Neighborhood
MF GO:0015318 inorganic molecular entity transmembrane transporter activity IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
MF GO:0019899 enzyme binding IEP Neighborhood
MF GO:0022890 inorganic cation transmembrane transporter activity IEP Neighborhood
BP GO:0023051 regulation of signaling IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
CC GO:0031011 Ino80 complex IEP Neighborhood
BP GO:0032012 regulation of ARF protein signal transduction IEP Neighborhood
CC GO:0033202 DNA helicase complex IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044454 nuclear chromosome part IEP Neighborhood
BP GO:0046578 regulation of Ras protein signal transduction IEP Neighborhood
MF GO:0046873 metal ion transmembrane transporter activity IEP Neighborhood
BP GO:0048583 regulation of response to stimulus IEP Neighborhood
MF GO:0051020 GTPase binding IEP Neighborhood
BP GO:0051056 regulation of small GTPase mediated signal transduction IEP Neighborhood
BP GO:0061919 process utilizing autophagic mechanism IEP Neighborhood
CC GO:0070603 SWI/SNF superfamily-type complex IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0071804 cellular potassium ion transport IEP Neighborhood
BP GO:0071805 potassium ion transmembrane transport IEP Neighborhood
CC GO:0097346 INO80-type complex IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
MF GO:0140096 catalytic activity, acting on a protein IEP Neighborhood
BP GO:1902531 regulation of intracellular signal transduction IEP Neighborhood
CC GO:1904949 ATPase complex IEP Neighborhood
InterPro domains Description Start Stop
IPR005120 UPF3_dom 8 127
No external refs found!