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  5. MA_10316984g0010

MA_10316984g0010


Description : group-II intron mitochondrial splicing factor (MISF74)


Gene families : OG0000198 (Archaeplastida) Phylogenetic Tree(s): OG0000198_tree ,
OG_05_0000086 (LandPlants) Phylogenetic Tree(s): OG_05_0000086_tree ,
OG_06_0000170 (SeedPlants) Phylogenetic Tree(s): OG_06_0000170_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10316984g0010
Cluster HCCA: Cluster_398

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00214000 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At3g09060... 0.03 Archaeplastida
AMTR_s00066p00107660 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AT1G53330 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.12 Archaeplastida
AT5G64320 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Archaeplastida
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
GSVIVT01031218001 No alias Pentatricopeptide repeat-containing protein At5g16420,... 0.04 Archaeplastida
Gb_00757 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.04 Archaeplastida
Gb_05553 No alias group-II intron mitochondrial splicing factor (MISF74) 0.06 Archaeplastida
Gb_06545 No alias Pentatricopeptide repeat-containing protein At2g06000... 0.05 Archaeplastida
Gb_06893 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Gb_12002 No alias Pentatricopeptide repeat-containing protein At3g48810... 0.07 Archaeplastida
Gb_23263 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.06 Archaeplastida
Gb_35219 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.06 Archaeplastida
Solyc02g077650.2.1 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.06 Archaeplastida
Solyc11g073230.1.1 No alias Pentatricopeptide repeat-containing protein At1g07740,... 0.04 Archaeplastida
Solyc12g014330.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
Zm00001e003447_P001 No alias no hits & (original description: none) 0.03 Archaeplastida
Zm00001e011589_P001 No alias no hits & (original description: none) 0.04 Archaeplastida
Zm00001e030818_P001 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0003830 beta-1,4-mannosylglycoprotein 4-beta-N-acetylglucosaminyltransferase activity IEP Neighborhood
BP GO:0005996 monosaccharide metabolic process IEP Neighborhood
BP GO:0006012 galactose metabolic process IEP Neighborhood
BP GO:0006486 protein glycosylation IEP Neighborhood
BP GO:0006487 protein N-linked glycosylation IEP Neighborhood
MF GO:0008108 UDP-glucose:hexose-1-phosphate uridylyltransferase activity IEP Neighborhood
BP GO:0008152 metabolic process IEP Neighborhood
MF GO:0008194 UDP-glycosyltransferase activity IEP Neighborhood
MF GO:0008375 acetylglucosaminyltransferase activity IEP Neighborhood
MF GO:0016740 transferase activity IEP Neighborhood
MF GO:0016758 transferase activity, transferring hexosyl groups IEP Neighborhood
MF GO:0016779 nucleotidyltransferase activity IEP Neighborhood
BP GO:0019318 hexose metabolic process IEP Neighborhood
BP GO:0043413 macromolecule glycosylation IEP Neighborhood
BP GO:0070085 glycosylation IEP Neighborhood
MF GO:0070569 uridylyltransferase activity IEP Neighborhood
MF GO:0140103 catalytic activity, acting on a glycoprotein IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 78 102
IPR002885 Pentatricopeptide_repeat 110 138
IPR002885 Pentatricopeptide_repeat 38 68
IPR002885 Pentatricopeptide_repeat 312 343
IPR002885 Pentatricopeptide_repeat 206 239
IPR002885 Pentatricopeptide_repeat 245 294
IPR002885 Pentatricopeptide_repeat 144 189
No external refs found!