AT5G08430

Description : SWIB/MDM2 domain;Plus-3;GYF

Gene families : OG0000906 (Archaeplastida) Phylogenetic Tree(s): OG0000906_tree ,
OG_05_0000582 (LandPlants) Phylogenetic Tree(s): OG_05_0000582_tree ,
OG_06_0003342 (SeedPlants) Phylogenetic Tree(s): OG_06_0003342_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G08430
Cluster	HCCA: Cluster_101

Target	Alias	Description	ECC score	Gene Family Method
LOC_Os10g36810.1	No alias	protein factor (NERD) of non-canonical RdDM pathway	0.02	Archaeplastida
Smo416330	No alias	No description available	0.03	Archaeplastida
Solyc01g086950.4.1	No alias	no hits & (original description: none)	0.04	Archaeplastida
Solyc01g103340.4.1	No alias	Uncharacterized protein At5g08430 OS=Arabidopsis...	0.03	Archaeplastida
Solyc01g150153.1.1	No alias	no hits & (original description: none)	0.03	Archaeplastida
Zm00001e027036_P001	No alias	Zinc finger CCCH domain-containing protein 19...	0.02	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000096	sulfur amino acid metabolic process	None	Extended
BP	GO:0000097	sulfur amino acid biosynthetic process	None	Extended
BP	GO:0000394	RNA splicing, via endonucleolytic cleavage and ligation	RCA	Interproscan
BP	GO:0002252	immune effector process	None	Extended
BP	GO:0002376	immune system process	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006082	organic acid metabolic process	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006520	cellular amino acid metabolic process	None	Extended
BP	GO:0006555	methionine metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006790	sulfur compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006952	defense response	None	Extended
BP	GO:0006955	immune response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0008652	cellular amino acid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009066	aspartate family amino acid metabolic process	None	Extended
BP	GO:0009067	aspartate family amino acid biosynthetic process	None	Extended
BP	GO:0009086	methionine biosynthetic process	RCA	Interproscan
BP	GO:0009314	response to radiation	None	Extended
BP	GO:0009416	response to light stimulus	None	Extended
BP	GO:0009605	response to external stimulus	None	Extended
BP	GO:0009607	response to biotic stimulus	None	Extended
BP	GO:0009615	response to virus	None	Extended
BP	GO:0009616	virus induced gene silencing	RCA	Interproscan
BP	GO:0009628	response to abiotic stimulus	None	Extended
BP	GO:0009648	photoperiodism	None	Extended
BP	GO:0009791	post-embryonic development	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0010050	vegetative phase change	RCA	Interproscan
BP	GO:0016053	organic acid biosynthetic process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0019752	carboxylic acid metabolic process	None	Extended
BP	GO:0022414	reproductive process	None	Extended
BP	GO:0032501	multicellular organismal process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0035821	modification of morphology or physiology of other organism	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043207	response to external biotic stimulus	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0043436	oxoacid metabolic process	None	Extended
BP	GO:0044003	modification by symbiont of host morphology or physiology	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044272	sulfur compound biosynthetic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0044283	small molecule biosynthetic process	None	Extended
BP	GO:0044419	interspecies interaction between organisms	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0045087	innate immune response	None	Extended
BP	GO:0046394	carboxylic acid biosynthetic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0048573	photoperiodism, flowering	RCA	Interproscan
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051607	defense response to virus	None	Extended
BP	GO:0051701	interaction with host	None	Extended
BP	GO:0051704	multi-organism process	None	Extended
BP	GO:0051707	response to other organism	None	Extended
BP	GO:0051817	modification of morphology or physiology of other organism involved in symbiotic interaction	None	Extended
BP	GO:0052018	modulation by symbiont of RNA levels in host	None	Extended
BP	GO:0052249	modulation of RNA levels in other organism involved in symbiotic interaction	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:0098542	defense response to other organism	None	Extended
BP	GO:0098586	cellular response to virus	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended
BP	GO:1901605	alpha-amino acid metabolic process	None	Extended
BP	GO:1901607	alpha-amino acid biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000902	cell morphogenesis	IEP	Neighborhood
MF	GO:0003712	transcription coregulator activity	IEP	Neighborhood
MF	GO:0003713	transcription coactivator activity	IEP	Neighborhood
MF	GO:0003972	RNA ligase (ATP) activity	IEP	Neighborhood
MF	GO:0004112	cyclic-nucleotide phosphodiesterase activity	IEP	Neighborhood
MF	GO:0004113	2',3'-cyclic-nucleotide 3'-phosphodiesterase activity	IEP	Neighborhood
MF	GO:0005345	purine nucleobase transmembrane transporter activity	IEP	Neighborhood
BP	GO:0006388	tRNA splicing, via endonucleolytic cleavage and ligation	IEP	Neighborhood
BP	GO:0006521	regulation of cellular amino acid metabolic process	IEP	Neighborhood
BP	GO:0007154	cell communication	IEP	Neighborhood
BP	GO:0007267	cell-cell signaling	IEP	Neighborhood
BP	GO:0007389	pattern specification process	IEP	Neighborhood
BP	GO:0008033	tRNA processing	IEP	Neighborhood
MF	GO:0008081	phosphoric diester hydrolase activity	IEP	Neighborhood
BP	GO:0008361	regulation of cell size	IEP	Neighborhood
MF	GO:0008452	RNA ligase activity	IEP	Neighborhood
BP	GO:0009069	serine family amino acid metabolic process	IEP	Neighborhood
BP	GO:0009266	response to temperature stimulus	IEP	Neighborhood
BP	GO:0009409	response to cold	IEP	Neighborhood
BP	GO:0009410	response to xenobiotic stimulus	IEP	Neighborhood
BP	GO:0009411	response to UV	IEP	Neighborhood
BP	GO:0009653	anatomical structure morphogenesis	IEP	Neighborhood
BP	GO:0009799	specification of symmetry	IEP	Neighborhood
BP	GO:0009825	multidimensional cell growth	IEP	Neighborhood
BP	GO:0009855	determination of bilateral symmetry	IEP	Neighborhood
BP	GO:0009889	regulation of biosynthetic process	IEP	Neighborhood
BP	GO:0009958	positive gravitropism	IEP	Neighborhood
BP	GO:0010014	meristem initiation	IEP	Neighborhood
BP	GO:0010015	root morphogenesis	IEP	Neighborhood
BP	GO:0010016	shoot system morphogenesis	IEP	Neighborhood
BP	GO:0010048	vernalization response	IEP	Neighborhood
BP	GO:0010073	meristem maintenance	IEP	Neighborhood
BP	GO:0010264	myo-inositol hexakisphosphate biosynthetic process	IEP	Neighborhood
BP	GO:0010267	production of ta-siRNAs involved in RNA interference	IEP	Neighborhood
BP	GO:0010364	regulation of ethylene biosynthetic process	IEP	Neighborhood
BP	GO:0010565	regulation of cellular ketone metabolic process	IEP	Neighborhood
BP	GO:0010629	negative regulation of gene expression	IEP	Neighborhood
MF	GO:0015205	nucleobase transmembrane transporter activity	IEP	Neighborhood
BP	GO:0016246	RNA interference	IEP	Neighborhood
BP	GO:0016441	posttranscriptional gene silencing	IEP	Neighborhood
MF	GO:0016886	ligase activity, forming phosphoric ester bonds	IEP	Neighborhood
MF	GO:0019205	nucleobase-containing compound kinase activity	IEP	Neighborhood
BP	GO:0023052	signaling	IEP	Neighborhood
BP	GO:0030422	production of siRNA involved in RNA interference	IEP	Neighborhood
BP	GO:0031050	dsRNA fragmentation	IEP	Neighborhood
BP	GO:0031323	regulation of cellular metabolic process	IEP	Neighborhood
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	Neighborhood
BP	GO:0031335	regulation of sulfur amino acid metabolic process	IEP	Neighborhood
BP	GO:0032350	regulation of hormone metabolic process	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0032535	regulation of cellular component size	IEP	Neighborhood
BP	GO:0032958	inositol phosphate biosynthetic process	IEP	Neighborhood
BP	GO:0032989	cellular component morphogenesis	IEP	Neighborhood
BP	GO:0033238	regulation of cellular amine metabolic process	IEP	Neighborhood
BP	GO:0033517	myo-inositol hexakisphosphate metabolic process	IEP	Neighborhood
BP	GO:0035194	posttranscriptional gene silencing by RNA	IEP	Neighborhood
BP	GO:0035196	production of miRNAs involved in gene silencing by miRNA	IEP	Neighborhood
BP	GO:0042762	regulation of sulfur metabolic process	IEP	Neighborhood
BP	GO:0043473	pigmentation	IEP	Neighborhood
BP	GO:0043476	pigment accumulation	IEP	Neighborhood
BP	GO:0043478	pigment accumulation in response to UV light	IEP	Neighborhood
BP	GO:0043479	pigment accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043480	pigment accumulation in tissues	IEP	Neighborhood
BP	GO:0043481	anthocyanin accumulation in tissues in response to UV light	IEP	Neighborhood
BP	GO:0043647	inositol phosphate metabolic process	IEP	Neighborhood
BP	GO:0045229	external encapsulating structure organization	IEP	Neighborhood
BP	GO:0046173	polyol biosynthetic process	IEP	Neighborhood
BP	GO:0046885	regulation of hormone biosynthetic process	IEP	Neighborhood
BP	GO:0048439	flower morphogenesis	IEP	Neighborhood
BP	GO:0048440	carpel development	IEP	Neighborhood
BP	GO:0048827	phyllome development	IEP	Neighborhood
BP	GO:0050789	regulation of biological process	IEP	Neighborhood
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	Neighborhood
MF	GO:0051731	polynucleotide 5'-hydroxyl-kinase activity	IEP	Neighborhood
BP	GO:0062012	regulation of small molecule metabolic process	IEP	Neighborhood
BP	GO:0065007	biological regulation	IEP	Neighborhood
BP	GO:0070918	production of small RNA involved in gene silencing by RNA	IEP	Neighborhood
BP	GO:0071554	cell wall organization or biogenesis	IEP	Neighborhood
BP	GO:0071555	cell wall organization	IEP	Neighborhood
CC	GO:0071944	cell periphery	IEP	Neighborhood
BP	GO:0080090	regulation of primary metabolic process	IEP	Neighborhood
BP	GO:0090066	regulation of anatomical structure size	IEP	Neighborhood
BP	GO:1900908	regulation of olefin metabolic process	IEP	Neighborhood
BP	GO:1900911	regulation of olefin biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR004343	Plus-3_dom	155	250
IPR003121	SWIB_MDM2_domain	36	106
IPR003169	GYF	500	538

External Links

No external refs found!

AT5G08430

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation