1. Home
  2. Species
  3. Arabidopsis thaliana
  4. Sequence
  5. AT5G10400

AT5G10400


Description : Histone superfamily protein


Gene families : OG0000119 (Archaeplastida) Phylogenetic Tree(s): OG0000119_tree ,
OG_05_0000124 (LandPlants) Phylogenetic Tree(s): OG_05_0000124_tree ,
OG_06_0000125 (SeedPlants) Phylogenetic Tree(s): OG_06_0000125_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G10400
Cluster HCCA: Cluster_110

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00018p00168040 No alias Chromatin organisation.histones.H3-type histone 0.09 Archaeplastida
AMTR_s00030p00044250 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
Cre06.g264650 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g265250 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Cre06.g265500 No alias Chromatin organisation.histones.H3-type histone 0.02 Archaeplastida
Cre06.g266650 No alias Chromatin organisation.histones.H3-type histone 0.06 Archaeplastida
Cre06.g267950 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g268350 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
Cre06.g274000 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274101 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274350 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g274850 No alias Chromatin organisation.histones.H3-type histone 0.06 Archaeplastida
Cre06.g275750 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g276600 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre06.g276850 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre12.g504650 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre12.g504800 No alias Chromatin organisation.histones.H3-type histone 0.06 Archaeplastida
Cre12.g505500 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre12.g506300 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre12.g506500 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre13.g569950 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre16.g650300 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
Cre16.g661450 No alias Cell cycle.mitosis and meiosis.chromosome... 0.04 Archaeplastida
Cre17.g708150 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre17.g708700 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Cre17.g709050 No alias Chromatin organisation.histones.H3-type histone 0.06 Archaeplastida
GSVIVT01025316001 No alias Histone H3.2 OS=Pisum sativum 0.05 Archaeplastida
GSVIVT01025318001 No alias Histone H3.2 OS=Pisum sativum 0.07 Archaeplastida
GSVIVT01026582001 No alias Histone H3.2 OS=Pisum sativum 0.08 Archaeplastida
GSVIVT01027073001 No alias Cell cycle.mitosis and meiosis.chromosome... 0.05 Archaeplastida
GSVIVT01032047001 No alias Histone H3 OS=Volvox carteri 0.05 Archaeplastida
GSVIVT01034510001 No alias Histone H3.2 OS=Pisum sativum 0.06 Archaeplastida
Gb_19430 No alias histone (H3) 0.04 Archaeplastida
Gb_27618 No alias histone (H3) 0.09 Archaeplastida
Gb_29026 No alias histone (H3) 0.07 Archaeplastida
Gb_29027 No alias histone (H3) 0.1 Archaeplastida
Gb_30564 No alias histone (H3) 0.06 Archaeplastida
Gb_36661 No alias histone (H3) 0.04 Archaeplastida
Gb_40804 No alias histone (H3) 0.05 Archaeplastida
LOC_Os01g64640.1 No alias histone (H3) 0.07 Archaeplastida
LOC_Os03g27310.2 No alias histone (H3) 0.03 Archaeplastida
LOC_Os04g34240.1 No alias histone (H3) 0.05 Archaeplastida
LOC_Os05g36280.1 No alias histone (H3) 0.1 Archaeplastida
LOC_Os05g41080.1 No alias histone H3 variant (CENH3) 0.04 Archaeplastida
LOC_Os06g04030.1 No alias histone (H3) 0.03 Archaeplastida
LOC_Os06g06460.1 No alias histone (H3) 0.04 Archaeplastida
LOC_Os06g06510.1 No alias histone (H3) 0.12 Archaeplastida
LOC_Os11g05730.1 No alias histone (H3) 0.06 Archaeplastida
MA_10432805g0020 No alias histone (H3) 0.04 Archaeplastida
MA_113838g0010 No alias histone (H3) 0.09 Archaeplastida
MA_125055g0020 No alias Histone H3.2 OS=Cichorium intybus (sp|q5mya4|h32_cicin : 122.0) 0.04 Archaeplastida
MA_1527811g0010 No alias No annotation 0.02 Archaeplastida
MA_17527g0010 No alias histone (H3) 0.02 Archaeplastida
MA_197719g0010 No alias histone (H3) 0.07 Archaeplastida
MA_210354g0010 No alias histone (H3) 0.04 Archaeplastida
MA_222556g0010 No alias Histone H3.2 OS=Lilium longiflorum (sp|q402e1|h32_lillo : 116.0) 0.02 Archaeplastida
MA_24261g0010 No alias histone (H3) 0.04 Archaeplastida
MA_350032g0010 No alias histone (H3) 0.03 Archaeplastida
MA_356208g0010 No alias histone (H3) 0.06 Archaeplastida
MA_561217g0010 No alias histone (H3) 0.05 Archaeplastida
MA_56411g0010 No alias histone (H3) 0.06 Archaeplastida
MA_74555g0010 No alias Histone H3.2 OS=Pisum sativum (sp|p68427|h32_pea : 98.2) 0.03 Archaeplastida
MA_871602g0010 No alias no hits & (original description: none) 0.02 Archaeplastida
Mp3g07730.1 No alias histone (H3) 0.04 Archaeplastida
Mp3g09090.1 No alias histone (H3) 0.06 Archaeplastida
Mp3g22050.1 No alias histone H3 variant (CENH3) 0.03 Archaeplastida
Mp7g10700.1 No alias histone (H3) 0.04 Archaeplastida
Mp7g10730.1 No alias histone (H3) 0.03 Archaeplastida
Mp7g18030.1 No alias histone (H3) 0.04 Archaeplastida
Pp3c18_14470V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c18_14481V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c1_20640V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c1_20670V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c22_8680V3.1 No alias Histone superfamily protein 0.04 Archaeplastida
Pp3c23_15100V3.1 No alias Histone superfamily protein 0.05 Archaeplastida
Pp3c24_13230V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c3_37020V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Pp3c8_2810V3.1 No alias Histone superfamily protein 0.03 Archaeplastida
Smo103546 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
Smo171192 No alias Cell cycle.mitosis and meiosis.chromosome... 0.04 Archaeplastida
Smo269004 No alias Chromatin organisation.histones.H3-type histone 0.03 Archaeplastida
Smo438193 No alias Chromatin organisation.histones.H3-type histone 0.04 Archaeplastida
Smo78992 No alias Chromatin organisation.histones.H3-type histone 0.05 Archaeplastida
Solyc01g074000.3.1 No alias histone (H3) 0.15 Archaeplastida
Solyc01g079110.4.1 No alias histone (H3) 0.1 Archaeplastida
Solyc01g080600.4.1 No alias histone (H3) 0.13 Archaeplastida
Solyc01g086820.4.1 No alias histone (H3) 0.14 Archaeplastida
Solyc02g077480.1.1 No alias histone (H3) 0.13 Archaeplastida
Solyc05g051500.4.1 No alias histone (H3) 0.06 Archaeplastida
Solyc10g008910.1.1 No alias histone (H3) 0.09 Archaeplastida
Solyc11g010230.2.1 No alias histone (H3) 0.04 Archaeplastida
Solyc12g056540.1.1 No alias histone (H3) 0.11 Archaeplastida
Zm00001e008155_P001 No alias histone (H3) 0.05 Archaeplastida
Zm00001e008160_P001 No alias histone (H3) 0.06 Archaeplastida
Zm00001e014760_P001 No alias histone (H3) 0.03 Archaeplastida
Zm00001e016861_P001 No alias histone (H3) 0.06 Archaeplastida
Zm00001e018263_P001 No alias histone (H3) 0.07 Archaeplastida
Zm00001e019170_P001 No alias histone (H3) 0.06 Archaeplastida
Zm00001e036599_P001 No alias histone (H3) 0.05 Archaeplastida
Zm00001e040856_P001 No alias histone (H3) 0.06 Archaeplastida
Zm00001e040876_P001 No alias no hits & (original description: none) 0.07 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding ISS Interproscan
CC GO:0005634 nucleus ISM Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0000226 microtubule cytoskeleton organization IEP Neighborhood
BP GO:0000280 nuclear division IEP Neighborhood
CC GO:0000786 nucleosome IEP Neighborhood
CC GO:0000790 nuclear chromatin IEP Neighborhood
BP GO:0000911 cytokinesis by cell plate formation IEP Neighborhood
BP GO:0001708 cell fate specification IEP Neighborhood
MF GO:0001871 pattern binding IEP Neighborhood
MF GO:0001872 (1->3)-beta-D-glucan binding IEP Neighborhood
BP GO:0003006 developmental process involved in reproduction IEP Neighborhood
MF GO:0004860 protein kinase inhibitor activity IEP Neighborhood
MF GO:0004861 cyclin-dependent protein serine/threonine kinase inhibitor activity IEP Neighborhood
CC GO:0005730 nucleolus IEP Neighborhood
CC GO:0005829 cytosol IEP Neighborhood
CC GO:0005911 cell-cell junction IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006259 DNA metabolic process IEP Neighborhood
BP GO:0006260 DNA replication IEP Neighborhood
BP GO:0006261 DNA-dependent DNA replication IEP Neighborhood
BP GO:0006270 DNA replication initiation IEP Neighborhood
BP GO:0006275 regulation of DNA replication IEP Neighborhood
BP GO:0006279 premeiotic DNA replication IEP Neighborhood
BP GO:0006281 DNA repair IEP Neighborhood
BP GO:0006304 DNA modification IEP Neighborhood
BP GO:0006305 DNA alkylation IEP Neighborhood
BP GO:0006306 DNA methylation IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006342 chromatin silencing IEP Neighborhood
BP GO:0006346 methylation-dependent chromatin silencing IEP Neighborhood
BP GO:0006464 cellular protein modification process IEP Neighborhood
BP GO:0006468 protein phosphorylation IEP Neighborhood
BP GO:0006479 protein methylation IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006974 cellular response to DNA damage stimulus IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007017 microtubule-based process IEP Neighborhood
BP GO:0007051 spindle organization IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0007166 cell surface receptor signaling pathway IEP Neighborhood
BP GO:0007167 enzyme linked receptor protein signaling pathway IEP Neighborhood
BP GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IEP Neighborhood
BP GO:0007346 regulation of mitotic cell cycle IEP Neighborhood
BP GO:0008156 negative regulation of DNA replication IEP Neighborhood
BP GO:0008213 protein alkylation IEP Neighborhood
BP GO:0008283 cell proliferation IEP Neighborhood
BP GO:0008285 negative regulation of cell proliferation IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
CC GO:0009506 plasmodesma IEP Neighborhood
CC GO:0009579 thylakoid IEP Neighborhood
BP GO:0009890 negative regulation of biosynthetic process IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0009908 flower development IEP Neighborhood
BP GO:0009909 regulation of flower development IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0010224 response to UV-B IEP Neighborhood
BP GO:0010389 regulation of G2/M transition of mitotic cell cycle IEP Neighborhood
BP GO:0010558 negative regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010564 regulation of cell cycle process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
BP GO:0016048 detection of temperature stimulus IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016569 covalent chromatin modification IEP Neighborhood
BP GO:0016570 histone modification IEP Neighborhood
BP GO:0016571 histone methylation IEP Neighborhood
BP GO:0016572 histone phosphorylation IEP Neighborhood
BP GO:0018022 peptidyl-lysine methylation IEP Neighborhood
BP GO:0018193 peptidyl-amino acid modification IEP Neighborhood
BP GO:0018205 peptidyl-lysine modification IEP Neighborhood
MF GO:0019210 kinase inhibitor activity IEP Neighborhood
BP GO:0019538 protein metabolic process IEP Neighborhood
BP GO:0022402 cell cycle process IEP Neighborhood
CC GO:0030054 cell junction IEP Neighborhood
MF GO:0030247 polysaccharide binding IEP Neighborhood
MF GO:0030291 protein serine/threonine kinase inhibitor activity IEP Neighborhood
MF GO:0030332 cyclin binding IEP Neighborhood
MF GO:0030337 DNA polymerase processivity factor activity IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0031048 chromatin silencing by small RNA IEP Neighborhood
CC GO:0031224 intrinsic component of membrane IEP Neighborhood
CC GO:0031225 anchored component of membrane IEP Neighborhood
CC GO:0031226 intrinsic component of plasma membrane IEP Neighborhood
CC GO:0031261 DNA replication preinitiation complex IEP Neighborhood
BP GO:0031324 negative regulation of cellular metabolic process IEP Neighborhood
BP GO:0031327 negative regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032259 methylation IEP Neighborhood
BP GO:0032502 developmental process IEP Neighborhood
BP GO:0032506 cytokinetic process IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
CC GO:0032993 protein-DNA complex IEP Neighborhood
BP GO:0033260 nuclear DNA replication IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
BP GO:0034968 histone lysine methylation IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0036211 protein modification process IEP Neighborhood
BP GO:0040029 regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0042023 DNA endoreduplication IEP Neighborhood
BP GO:0042127 regulation of cell proliferation IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
BP GO:0043412 macromolecule modification IEP Neighborhood
BP GO:0043414 macromolecule methylation IEP Neighborhood
BP GO:0044030 regulation of DNA methylation IEP Neighborhood
BP GO:0044237 cellular metabolic process IEP Neighborhood
BP GO:0044238 primary metabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044260 cellular macromolecule metabolic process IEP Neighborhood
BP GO:0044267 cellular protein metabolic process IEP Neighborhood
CC GO:0044422 organelle part IEP Neighborhood
CC GO:0044427 chromosomal part IEP Neighborhood
CC GO:0044428 nuclear part IEP Neighborhood
CC GO:0044446 intracellular organelle part IEP Neighborhood
BP GO:0044728 DNA methylation or demethylation IEP Neighborhood
BP GO:0044786 cell cycle DNA replication IEP Neighborhood
CC GO:0044815 DNA packaging complex IEP Neighborhood
BP GO:0045814 negative regulation of gene expression, epigenetic IEP Neighborhood
BP GO:0045934 negative regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
CC GO:0046658 anchored component of plasma membrane IEP Neighborhood
BP GO:0048285 organelle fission IEP Neighborhood
BP GO:0048449 floral organ formation IEP Neighborhood
BP GO:0048451 petal formation IEP Neighborhood
BP GO:0048453 sepal formation IEP Neighborhood
BP GO:0048580 regulation of post-embryonic development IEP Neighborhood
BP GO:0048646 anatomical structure formation involved in morphogenesis IEP Neighborhood
BP GO:0048831 regulation of shoot system development IEP Neighborhood
BP GO:0050793 regulation of developmental process IEP Neighborhood
BP GO:0051052 regulation of DNA metabolic process IEP Neighborhood
BP GO:0051053 negative regulation of DNA metabolic process IEP Neighborhood
BP GO:0051172 negative regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051225 spindle assembly IEP Neighborhood
BP GO:0051239 regulation of multicellular organismal process IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051567 histone H3-K9 methylation IEP Neighborhood
BP GO:0051726 regulation of cell cycle IEP Neighborhood
BP GO:0061647 histone H3-K9 modification IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0070925 organelle assembly IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
CC GO:0080008 Cul4-RING E3 ubiquitin ligase complex IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:0090567 reproductive shoot system development IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
BP GO:1901987 regulation of cell cycle phase transition IEP Neighborhood
BP GO:1901990 regulation of mitotic cell cycle phase transition IEP Neighborhood
BP GO:1902410 mitotic cytokinetic process IEP Neighborhood
BP GO:1902749 regulation of cell cycle G2/M phase transition IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
BP GO:1903047 mitotic cell cycle process IEP Neighborhood
BP GO:1905393 plant organ formation IEP Neighborhood
BP GO:2000026 regulation of multicellular organismal development IEP Neighborhood
BP GO:2000104 negative regulation of DNA-dependent DNA replication IEP Neighborhood
BP GO:2000113 negative regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2000241 regulation of reproductive process IEP Neighborhood
InterPro domains Description Start Stop
IPR007125 Histone_H2A/H2B/H3 1 132
No external refs found!