1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_10427001g0020

MA_10427001g0020


Description : Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica (sp|q9zts1|sym_orysj : 400.0)


Gene families : OG0002980 (Archaeplastida) Phylogenetic Tree(s): OG0002980_tree ,
OG_05_0003155 (LandPlants) Phylogenetic Tree(s): OG_05_0003155_tree ,
OG_06_0003494 (SeedPlants) Phylogenetic Tree(s): OG_06_0003494_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10427001g0020
Cluster HCCA: Cluster_516

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00209p00023450 evm_27.TU.AmTr_v1... Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 Archaeplastida
AT4G13780 No alias methionine--tRNA ligase, putative / methionyl-tRNA... 0.07 Archaeplastida
Cpa|evm.model.tig00020614.25 No alias Probable methionine--tRNA ligase OS=Oryza sativa subsp. japonica 0.03 Archaeplastida
Cre02.g087950 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.02 Archaeplastida
GSVIVT01020924001 No alias Protein biosynthesis.aminoacyl-tRNA synthetase... 0.03 Archaeplastida
LOC_Os06g31210.1 No alias methionine-tRNA ligase 0.02 Archaeplastida
Pp3c13_2300V3.1 No alias methionine--tRNA ligase, putative / methionyl-tRNA... 0.04 Archaeplastida
Zm00001e000847_P001 No alias methionine-tRNA ligase 0.03 Archaeplastida
Zm00001e038714_P001 No alias methionine-tRNA ligase 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEA Interproscan
MF GO:0004812 aminoacyl-tRNA ligase activity IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
BP GO:0006418 tRNA aminoacylation for protein translation IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0003917 DNA topoisomerase type I activity IEP Neighborhood
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP Neighborhood
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005534 galactose binding IEP Neighborhood
CC GO:0005643 nuclear pore IEP Neighborhood
CC GO:0005783 endoplasmic reticulum IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006888 ER to Golgi vesicle-mediated transport IEP Neighborhood
BP GO:0006913 nucleocytoplasmic transport IEP Neighborhood
BP GO:0008033 tRNA processing IEP Neighborhood
MF GO:0008170 N-methyltransferase activity IEP Neighborhood
MF GO:0008173 RNA methyltransferase activity IEP Neighborhood
MF GO:0008175 tRNA methyltransferase activity IEP Neighborhood
MF GO:0008234 cysteine-type peptidase activity IEP Neighborhood
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
BP GO:0016579 protein deubiquitination IEP Neighborhood
MF GO:0016763 transferase activity, transferring pentosyl groups IEP Neighborhood
MF GO:0016853 isomerase activity IEP Neighborhood
MF GO:0017056 structural constituent of nuclear pore IEP Neighborhood
MF GO:0019783 ubiquitin-like protein-specific protease activity IEP Neighborhood
CC GO:0030120 vesicle coat IEP Neighborhood
CC GO:0030127 COPII vesicle coat IEP Neighborhood
MF GO:0030246 carbohydrate binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
MF GO:0036459 thiol-dependent ubiquitinyl hydrolase activity IEP Neighborhood
CC GO:0043227 membrane-bounded organelle IEP Neighborhood
CC GO:0043231 intracellular membrane-bounded organelle IEP Neighborhood
CC GO:0044433 cytoplasmic vesicle part IEP Neighborhood
BP GO:0046907 intracellular transport IEP Neighborhood
MF GO:0048029 monosaccharide binding IEP Neighborhood
BP GO:0048193 Golgi vesicle transport IEP Neighborhood
BP GO:0051169 nuclear transport IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0051641 cellular localization IEP Neighborhood
BP GO:0051649 establishment of localization in cell IEP Neighborhood
BP GO:0070646 protein modification by small protein removal IEP Neighborhood
BP GO:0070647 protein modification by small protein conjugation or removal IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
MF GO:0101005 ubiquitinyl hydrolase activity IEP Neighborhood
InterPro domains Description Start Stop
IPR015413 Methionyl/Leucyl_tRNA_Synth 29 124
No external refs found!