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  5. MA_10427900g0020

MA_10427900g0020


Description : ssDNA-binding protein (SSB)


Gene families : OG0003675 (Archaeplastida) Phylogenetic Tree(s): OG0003675_tree ,
OG_05_0002675 (LandPlants) Phylogenetic Tree(s): OG_05_0002675_tree ,
OG_06_0007502 (SeedPlants) Phylogenetic Tree(s): OG_06_0007502_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10427900g0020
Cluster HCCA: Cluster_84

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00039p00044370 evm_27.TU.AmTr_v1... Cell cycle.organelle machineries.DNA... 0.02 Archaeplastida
AMTR_s00066p00089800 evm_27.TU.AmTr_v1... Cell cycle.organelle machineries.DNA... 0.08 Archaeplastida
AT3G18580 No alias Nucleic acid-binding, OB-fold-like protein 0.05 Archaeplastida
AT4G11060 MTSSB mitochondrially targeted single-stranded DNA binding protein 0.07 Archaeplastida
GSVIVT01022737001 No alias Cell cycle.organelle machineries.DNA... 0.09 Archaeplastida
GSVIVT01031193001 No alias Cell cycle.organelle machineries.DNA... 0.06 Archaeplastida
Gb_14578 No alias ssDNA-binding protein (SSB) 0.04 Archaeplastida
MA_10430009g0010 No alias ssDNA-binding protein (SSB) 0.04 Archaeplastida
Mp4g09850.1 No alias ssDNA-binding protein (SSB) 0.03 Archaeplastida
Pp3c5_8750V3.1 No alias Nucleic acid-binding, OB-fold-like protein 0.05 Archaeplastida
Solyc01g100080.3.1 No alias ssDNA-binding protein (SSB) 0.08 Archaeplastida
Solyc12g038370.2.1 No alias ssDNA-binding protein (SSB) 0.05 Archaeplastida
Zm00001e020348_P002 No alias ssDNA-binding protein (SSB) 0.03 Archaeplastida
Zm00001e032095_P004 No alias ssDNA-binding protein (SSB) 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003697 single-stranded DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0000774 adenyl-nucleotide exchange factor activity IEP Neighborhood
MF GO:0003735 structural constituent of ribosome IEP Neighborhood
MF GO:0003916 DNA topoisomerase activity IEP Neighborhood
MF GO:0005198 structural molecule activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005759 mitochondrial matrix IEP Neighborhood
CC GO:0005840 ribosome IEP Neighborhood
BP GO:0006265 DNA topological change IEP Neighborhood
BP GO:0006325 chromatin organization IEP Neighborhood
BP GO:0006334 nucleosome assembly IEP Neighborhood
BP GO:0006412 translation IEP Neighborhood
BP GO:0006457 protein folding IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006807 nitrogen compound metabolic process IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009059 macromolecule biosynthetic process IEP Neighborhood
BP GO:0009987 cellular process IEP Neighborhood
BP GO:0016043 cellular component organization IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
BP GO:0022613 ribonucleoprotein complex biogenesis IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
CC GO:0031974 membrane-enclosed lumen IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0034645 cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:0034728 nucleosome organization IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
BP GO:0042254 ribosome biogenesis IEP Neighborhood
MF GO:0042802 identical protein binding IEP Neighborhood
MF GO:0042803 protein homodimerization activity IEP Neighborhood
BP GO:0043043 peptide biosynthetic process IEP Neighborhood
BP GO:0043170 macromolecule metabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043228 non-membrane-bounded organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
CC GO:0043232 intracellular non-membrane-bounded organelle IEP Neighborhood
CC GO:0043233 organelle lumen IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0043604 amide biosynthetic process IEP Neighborhood
BP GO:0044085 cellular component biogenesis IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044429 mitochondrial part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
MF GO:0051087 chaperone binding IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
MF GO:0060590 ATPase regulator activity IEP Neighborhood
BP GO:0065004 protein-DNA complex assembly IEP Neighborhood
CC GO:0070013 intracellular organelle lumen IEP Neighborhood
BP GO:0071103 DNA conformation change IEP Neighborhood
BP GO:0071824 protein-DNA complex subunit organization IEP Neighborhood
BP GO:0071840 cellular component organization or biogenesis IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
MF GO:0140097 catalytic activity, acting on DNA IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
BP GO:1901566 organonitrogen compound biosynthetic process IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
CC GO:1990904 ribonucleoprotein complex IEP Neighborhood
InterPro domains Description Start Stop
IPR000424 Primosome_PriB/ssb 57 147
No external refs found!