Coexpression cluster: Cluster_84 (HCCA)

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Average Expression Profile

Enriched GO Terms (corrected p-value < 0.05) (download table)
ID Label % in cluster Enrichment log2 p-value Corrected p-value
GO:0044444 cytoplasmic part 10.7% (23/215) 3.7 0.0 0.0
GO:0034641 cellular nitrogen compound metabolic process 13.49% (29/215) 3.03 0.0 0.0
GO:0044424 intracellular part 12.56% (27/215) 2.79 0.0 0.0
GO:0003735 structural constituent of ribosome 6.98% (15/215) 4.09 0.0 0.0
GO:0043043 peptide biosynthetic process 6.98% (15/215) 4.09 0.0 0.0
GO:0006412 translation 6.98% (15/215) 4.11 0.0 0.0
GO:0005840 ribosome 6.98% (15/215) 4.13 0.0 0.0
GO:0043604 amide biosynthetic process 6.98% (15/215) 4.01 0.0 0.0
GO:0044464 cell part 12.56% (27/215) 2.66 0.0 0.0
GO:0043228 non-membrane-bounded organelle 6.98% (15/215) 4.02 0.0 0.0
GO:0043232 intracellular non-membrane-bounded organelle 6.98% (15/215) 4.02 0.0 0.0
GO:0006518 peptide metabolic process 6.98% (15/215) 3.99 0.0 0.0
GO:0005198 structural molecule activity 6.98% (15/215) 3.96 0.0 0.0
GO:1990904 ribonucleoprotein complex 6.98% (15/215) 3.92 0.0 0.0
GO:0043603 cellular amide metabolic process 6.98% (15/215) 3.91 0.0 0.0
GO:1901566 organonitrogen compound biosynthetic process 8.37% (18/215) 3.3 0.0 0.0
GO:0034645 cellular macromolecule biosynthetic process 7.91% (17/215) 3.41 0.0 0.0
GO:0003676 nucleic acid binding 13.95% (30/215) 2.29 0.0 0.0
GO:0044271 cellular nitrogen compound biosynthetic process 8.37% (18/215) 3.23 0.0 0.0
GO:0009059 macromolecule biosynthetic process 7.91% (17/215) 3.31 0.0 0.0
GO:0043229 intracellular organelle 7.91% (17/215) 3.29 0.0 0.0
GO:0043226 organelle 7.91% (17/215) 3.29 0.0 0.0
GO:1901363 heterocyclic compound binding 23.72% (51/215) 1.48 0.0 0.0
GO:0097159 organic cyclic compound binding 23.72% (51/215) 1.48 0.0 0.0
GO:0044249 cellular biosynthetic process 9.3% (20/215) 2.61 0.0 0.0
GO:0032991 protein-containing complex 8.84% (19/215) 2.69 0.0 0.0
GO:1901576 organic substance biosynthetic process 9.3% (20/215) 2.52 0.0 0.0
GO:0003723 RNA binding 5.58% (12/215) 3.49 0.0 0.0
GO:0009058 biosynthetic process 9.3% (20/215) 2.37 0.0 0.0
GO:0044429 mitochondrial part 2.79% (6/215) 5.5 0.0 0.0
GO:0090304 nucleic acid metabolic process 6.05% (13/215) 2.94 0.0 0.0
GO:0006139 nucleobase-containing compound metabolic process 6.51% (14/215) 2.62 0.0 1e-06
GO:0005759 mitochondrial matrix 1.4% (3/215) 7.86 0.0 1e-06
GO:0006807 nitrogen compound metabolic process 14.88% (32/215) 1.49 0.0 1e-06
GO:0005488 binding 27.91% (60/215) 0.95 0.0 2e-06
GO:0031974 membrane-enclosed lumen 1.4% (3/215) 7.54 0.0 3e-06
GO:0043233 organelle lumen 1.4% (3/215) 7.54 0.0 3e-06
GO:0070013 intracellular organelle lumen 1.4% (3/215) 7.54 0.0 3e-06
GO:0005575 cellular_component 13.49% (29/215) 1.51 0.0 3e-06
GO:0046483 heterocycle metabolic process 6.51% (14/215) 2.45 0.0 3e-06
GO:0006725 cellular aromatic compound metabolic process 6.51% (14/215) 2.4 1e-06 5e-06
GO:0043170 macromolecule metabolic process 13.49% (29/215) 1.47 1e-06 6e-06
GO:0035639 purine ribonucleoside triphosphate binding 10.7% (23/215) 1.69 1e-06 8e-06
GO:1901360 organic cyclic compound metabolic process 6.51% (14/215) 2.32 1e-06 8e-06
GO:0008144 drug binding 10.23% (22/215) 1.72 1e-06 9e-06
GO:0044237 cellular metabolic process 14.42% (31/215) 1.36 1e-06 1.1e-05
GO:0016070 RNA metabolic process 4.19% (9/215) 2.93 3e-06 2.5e-05
GO:0005524 ATP binding 9.3% (20/215) 1.67 6e-06 4.5e-05
GO:0003916 DNA topoisomerase activity 1.4% (3/215) 6.16 9e-06 6.3e-05
GO:0006265 DNA topological change 1.4% (3/215) 6.16 9e-06 6.3e-05
GO:0005741 mitochondrial outer membrane 1.4% (3/215) 6.05 1.2e-05 7.3e-05
GO:0098805 whole membrane 1.4% (3/215) 6.05 1.2e-05 7.3e-05
GO:0031968 organelle outer membrane 1.4% (3/215) 6.05 1.2e-05 7.3e-05
GO:0009987 cellular process 15.81% (34/215) 1.15 1.1e-05 7.3e-05
GO:0044238 primary metabolic process 15.35% (33/215) 1.17 1.1e-05 7.5e-05
GO:0016874 ligase activity 2.79% (6/215) 3.57 1.3e-05 8.1e-05
GO:0071103 DNA conformation change 1.4% (3/215) 5.86 1.8e-05 0.000108
GO:0043168 anion binding 11.63% (25/215) 1.32 2.6e-05 0.000153
GO:0071704 organic substance metabolic process 15.35% (33/215) 1.1 2.7e-05 0.000159
GO:0098588 bounding membrane of organelle 1.4% (3/215) 5.61 3.1e-05 0.000176
GO:0036094 small molecule binding 11.63% (25/215) 1.3 3.2e-05 0.000177
GO:0032555 purine ribonucleotide binding 10.7% (23/215) 1.38 3.2e-05 0.000179
GO:0017076 purine nucleotide binding 10.7% (23/215) 1.37 3.3e-05 0.00018
GO:0003674 molecular_function 36.74% (79/215) 0.59 3.5e-05 0.000186
GO:0019867 outer membrane 1.4% (3/215) 5.54 3.6e-05 0.00019
GO:0032553 ribonucleotide binding 10.7% (23/215) 1.36 3.8e-05 0.000198
GO:0097367 carbohydrate derivative binding 10.7% (23/215) 1.35 4.3e-05 0.000218
GO:0034660 ncRNA metabolic process 2.33% (5/215) 3.69 4.7e-05 0.000236
GO:0031966 mitochondrial membrane 1.4% (3/215) 5.16 8.2e-05 0.000403
GO:0004055 argininosuccinate synthase activity 0.93% (2/215) 6.95 0.000103 0.000502
GO:0000166 nucleotide binding 10.7% (23/215) 1.25 0.000117 0.000555
GO:1901265 nucleoside phosphate binding 10.7% (23/215) 1.25 0.000117 0.000555
GO:0044260 cellular macromolecule metabolic process 9.77% (21/215) 1.32 0.000121 0.000565
GO:0051276 chromosome organization 1.4% (3/215) 4.95 0.000126 0.000581
GO:0031090 organelle membrane 1.4% (3/215) 4.91 0.000139 0.000633
GO:0032559 adenyl ribonucleotide binding 9.3% (20/215) 1.32 0.000178 0.0008
GO:0030554 adenyl nucleotide binding 9.3% (20/215) 1.32 0.000182 0.000806
GO:0006526 arginine biosynthetic process 0.93% (2/215) 6.47 0.000215 0.000929
GO:0006525 arginine metabolic process 0.93% (2/215) 6.47 0.000215 0.000929
GO:0005852 eukaryotic translation initiation factor 3 complex 0.93% (2/215) 5.95 0.000458 0.001954
GO:0016879 ligase activity, forming carbon-nitrogen bonds 1.4% (3/215) 4.28 0.000515 0.002167
GO:0044422 organelle part 3.26% (7/215) 2.33 0.000537 0.002207
GO:0044446 intracellular organelle part 3.26% (7/215) 2.33 0.000537 0.002207
GO:0042254 ribosome biogenesis 0.93% (2/215) 5.69 0.00067 0.002686
GO:0022613 ribonucleoprotein complex biogenesis 0.93% (2/215) 5.69 0.00067 0.002686
GO:0016769 transferase activity, transferring nitrogenous groups 0.93% (2/215) 5.58 0.00079 0.003095
GO:0008483 transaminase activity 0.93% (2/215) 5.58 0.00079 0.003095
GO:0044085 cellular component biogenesis 0.93% (2/215) 5.47 0.000919 0.003407
GO:0009084 glutamine family amino acid biosynthetic process 0.93% (2/215) 5.47 0.000919 0.003407
GO:0009064 glutamine family amino acid metabolic process 0.93% (2/215) 5.47 0.000919 0.003407
GO:0034470 ncRNA processing 1.4% (3/215) 4.0 0.000897 0.003475
GO:1901564 organonitrogen compound metabolic process 9.77% (21/215) 1.1 0.000913 0.003498
GO:0140097 catalytic activity, acting on DNA 1.4% (3/215) 3.93 0.001039 0.003808
GO:0006396 RNA processing 1.86% (4/215) 3.16 0.001117 0.004052
GO:0006996 organelle organization 1.4% (3/215) 3.79 0.001363 0.004892
GO:0071840 cellular component organization or biogenesis 2.79% (6/215) 2.23 0.001893 0.006723
GO:0006259 DNA metabolic process 1.86% (4/215) 2.94 0.001914 0.00673
GO:0016072 rRNA metabolic process 0.93% (2/215) 4.75 0.002507 0.008636
GO:0006364 rRNA processing 0.93% (2/215) 4.75 0.002507 0.008636
GO:0140101 catalytic activity, acting on a tRNA 1.4% (3/215) 3.45 0.002693 0.009184
GO:0046037 GMP metabolic process 0.47% (1/215) 8.28 0.003227 0.010479
GO:0003922 GMP synthase (glutamine-hydrolyzing) activity 0.47% (1/215) 8.28 0.003227 0.010479
GO:0006177 GMP biosynthetic process 0.47% (1/215) 8.28 0.003227 0.010479
GO:1901070 guanosine-containing compound biosynthetic process 0.47% (1/215) 8.28 0.003227 0.010479
GO:0044267 cellular protein metabolic process 6.98% (15/215) 1.17 0.003171 0.010705
GO:0006399 tRNA metabolic process 1.4% (3/215) 3.29 0.003686 0.011858
GO:0008152 metabolic process 16.28% (35/215) 0.67 0.004079 0.013
GO:0043167 ion binding 12.56% (27/215) 0.74 0.006254 0.019746
GO:0000439 transcription factor TFIIH core complex 0.47% (1/215) 7.28 0.006443 0.020157
GO:0006520 cellular amino acid metabolic process 1.86% (4/215) 2.44 0.00669 0.020739
GO:0019538 protein metabolic process 7.44% (16/215) 0.99 0.007326 0.022506
GO:0046129 purine ribonucleoside biosynthetic process 0.47% (1/215) 6.69 0.009649 0.027884
GO:0042455 ribonucleoside biosynthetic process 0.47% (1/215) 6.69 0.009649 0.027884
GO:0009163 nucleoside biosynthetic process 0.47% (1/215) 6.69 0.009649 0.027884
GO:0004809 tRNA (guanine-N2-)-methyltransferase activity 0.47% (1/215) 6.69 0.009649 0.027884
GO:0042451 purine nucleoside biosynthetic process 0.47% (1/215) 6.69 0.009649 0.027884
GO:1901659 glycosyl compound biosynthetic process 0.47% (1/215) 6.69 0.009649 0.027884
GO:0140098 catalytic activity, acting on RNA 1.86% (4/215) 2.29 0.009543 0.029054
GO:0003743 translation initiation factor activity 0.93% (2/215) 3.63 0.011466 0.032857
GO:0016853 isomerase activity 1.4% (3/215) 2.66 0.012226 0.034743
GO:0003918 DNA topoisomerase type II (ATP-hydrolyzing) activity 0.47% (1/215) 5.95 0.01603 0.044441
GO:0008097 5S rRNA binding 0.47% (1/215) 5.95 0.01603 0.044441
GO:0061505 DNA topoisomerase II activity 0.47% (1/215) 5.95 0.01603 0.044441
GO:0016875 ligase activity, forming carbon-oxygen bonds 0.93% (2/215) 3.32 0.017259 0.046341
GO:0043038 amino acid activation 0.93% (2/215) 3.32 0.017259 0.046341
GO:0004812 aminoacyl-tRNA ligase activity 0.93% (2/215) 3.32 0.017259 0.046341
GO:0043039 tRNA aminoacylation 0.93% (2/215) 3.32 0.017259 0.046341
Enriched Clades (corrected p-value < 0.05) (download table)
Clade % in cluster Enrichment log2 p-value Corrected p-value Gene Family Method
No enriched Clades found
Similar Clusters (download table)
Species Clustering Method Target Jaccard index Gene Family Method (for comparison) Actions
Arabidopsis thaliana HCCA Cluster_39 0.092 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_58 0.019 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_122 0.034 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_134 0.084 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_160 0.02 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_166 0.021 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_183 0.064 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_221 0.029 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_228 0.022 Archaeplastida Compare
Arabidopsis thaliana HCCA Cluster_252 0.03 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_27 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_50 0.036 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_129 0.056 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_164 0.022 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_194 0.056 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_196 0.026 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_235 0.041 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_245 0.019 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_249 0.042 Archaeplastida Compare
Amborella trichopoda HCCA Cluster_255 0.025 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_15 0.053 Archaeplastida Compare
Cyanophora paradoxa HCCA Cluster_144 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_4 0.025 Archaeplastida Compare
Gingko biloba HCCA Cluster_41 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_116 0.118 Archaeplastida Compare
Gingko biloba HCCA Cluster_129 0.04 Archaeplastida Compare
Gingko biloba HCCA Cluster_131 0.056 Archaeplastida Compare
Gingko biloba HCCA Cluster_151 0.02 Archaeplastida Compare
Gingko biloba HCCA Cluster_175 0.047 Archaeplastida Compare
Gingko biloba HCCA Cluster_184 0.031 Archaeplastida Compare
Gingko biloba HCCA Cluster_212 0.019 Archaeplastida Compare
Gingko biloba HCCA Cluster_216 0.021 Archaeplastida Compare
Gingko biloba HCCA Cluster_329 0.024 Archaeplastida Compare
Gingko biloba HCCA Cluster_335 0.034 Archaeplastida Compare
Zea mays HCCA Cluster_6 0.036 Archaeplastida Compare
Zea mays HCCA Cluster_7 0.085 Archaeplastida Compare
Zea mays HCCA Cluster_56 0.075 Archaeplastida Compare
Zea mays HCCA Cluster_103 0.028 Archaeplastida Compare
Zea mays HCCA Cluster_110 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_137 0.06 Archaeplastida Compare
Zea mays HCCA Cluster_181 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_195 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_199 0.024 Archaeplastida Compare
Zea mays HCCA Cluster_216 0.044 Archaeplastida Compare
Zea mays HCCA Cluster_250 0.027 Archaeplastida Compare
Zea mays HCCA Cluster_261 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_275 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_276 0.026 Archaeplastida Compare
Zea mays HCCA Cluster_290 0.03 Archaeplastida Compare
Zea mays HCCA Cluster_313 0.021 Archaeplastida Compare
Zea mays HCCA Cluster_328 0.019 Archaeplastida Compare
Zea mays HCCA Cluster_346 0.02 Archaeplastida Compare
Zea mays HCCA Cluster_350 0.032 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_16 0.064 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_24 0.03 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_36 0.078 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_110 0.025 Archaeplastida Compare
Marchantia polymorpha HCCA Cluster_160 0.053 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_11 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_19 0.044 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_20 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_28 0.047 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_81 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_95 0.031 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_111 0.021 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_114 0.035 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_124 0.026 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_155 0.029 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_167 0.064 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_186 0.022 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_192 0.027 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_237 0.02 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_244 0.03 Archaeplastida Compare
Physcomitrella patens HCCA Cluster_248 0.072 Archaeplastida Compare
Picea abies HCCA Cluster_229 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_261 0.04 Archaeplastida Compare
Picea abies HCCA Cluster_296 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_321 0.042 Archaeplastida Compare
Picea abies HCCA Cluster_339 0.022 Archaeplastida Compare
Picea abies HCCA Cluster_403 0.025 Archaeplastida Compare
Picea abies HCCA Cluster_406 0.019 Archaeplastida Compare
Picea abies HCCA Cluster_496 0.027 Archaeplastida Compare
Picea abies HCCA Cluster_498 0.031 Archaeplastida Compare
Picea abies HCCA Cluster_522 0.021 Archaeplastida Compare
Oryza sativa HCCA Cluster_41 0.022 Archaeplastida Compare
Oryza sativa HCCA Cluster_54 0.028 Archaeplastida Compare
Oryza sativa HCCA Cluster_94 0.121 Archaeplastida Compare
Oryza sativa HCCA Cluster_140 0.065 Archaeplastida Compare
Oryza sativa HCCA Cluster_191 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_254 0.026 Archaeplastida Compare
Oryza sativa HCCA Cluster_273 0.025 Archaeplastida Compare
Oryza sativa HCCA Cluster_297 0.023 Archaeplastida Compare
Oryza sativa HCCA Cluster_347 0.019 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_3 0.053 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_75 0.033 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_88 0.026 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_137 0.023 Archaeplastida Compare
Selaginella moellendorffii HCCA Cluster_148 0.031 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_8 0.03 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_26 0.047 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_53 0.022 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_79 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_86 0.051 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_105 0.093 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_131 0.04 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_202 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_207 0.047 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_209 0.051 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_217 0.02 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_222 0.046 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_243 0.024 Archaeplastida Compare
Solanum lycopersicum HCCA Cluster_251 0.058 Archaeplastida Compare
Vitis vinifera HCCA Cluster_1 0.02 Archaeplastida Compare
Vitis vinifera HCCA Cluster_22 0.037 Archaeplastida Compare
Vitis vinifera HCCA Cluster_44 0.076 Archaeplastida Compare
Vitis vinifera HCCA Cluster_60 0.079 Archaeplastida Compare
Vitis vinifera HCCA Cluster_69 0.025 Archaeplastida Compare
Vitis vinifera HCCA Cluster_121 0.028 Archaeplastida Compare
Vitis vinifera HCCA Cluster_152 0.033 Archaeplastida Compare
Vitis vinifera HCCA Cluster_172 0.061 Archaeplastida Compare
Vitis vinifera HCCA Cluster_197 0.044 Archaeplastida Compare
Vitis vinifera HCCA Cluster_236 0.034 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_17 0.023 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_21 0.033 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_22 0.036 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_25 0.022 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_35 0.044 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_56 0.021 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_60 0.026 Archaeplastida Compare
Chlamydomonas reinhardtii HCCA Cluster_100 0.024 Archaeplastida Compare
Sequences (215) (download table)

InterPro Domains

GO Terms

Family Terms