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  5. MA_10427994g0010

MA_10427994g0010


Description : RUB ligase E3 protein (RBX1). UBQ-E2-recruiting component RBX1 of SKP1-CUL1-FBX (SCF) E3 ligase complexes


Gene families : OG0002912 (Archaeplastida) Phylogenetic Tree(s): OG0002912_tree ,
OG_05_0003432 (LandPlants) Phylogenetic Tree(s): OG_05_0003432_tree ,
OG_06_0003522 (SeedPlants) Phylogenetic Tree(s): OG_06_0003522_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10427994g0010
Cluster HCCA: Cluster_273

Target Alias Description ECC score Gene Family Method Actions
AT5G20570 HRT1, ATRBX1, RBX1, ROC1 RING-box 1 0.03 Archaeplastida
GSVIVT01015070001 No alias Protein degradation.peptide tagging.Related-to-Ubiquitin... 0.03 Archaeplastida
LOC_Os01g01700.1 No alias RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.04 Archaeplastida
LOC_Os02g47870.1 No alias RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.02 Archaeplastida
Solyc06g062940.4.1 No alias No annotation 0.03 Archaeplastida
Solyc12g009120.2.1 No alias RUB ligase E3 protein (RBX1). UBQ-E2-recruiting... 0.03 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003839 gamma-glutamylcyclotransferase activity IEP Neighborhood
CC GO:0005575 cellular_component IEP Neighborhood
CC GO:0005739 mitochondrion IEP Neighborhood
BP GO:0006364 rRNA processing IEP Neighborhood
BP GO:0006396 RNA processing IEP Neighborhood
BP GO:0006518 peptide metabolic process IEP Neighborhood
BP GO:0006575 cellular modified amino acid metabolic process IEP Neighborhood
BP GO:0006605 protein targeting IEP Neighborhood
BP GO:0006749 glutathione metabolic process IEP Neighborhood
BP GO:0006751 glutathione catabolic process IEP Neighborhood
BP GO:0006790 sulfur compound metabolic process IEP Neighborhood
BP GO:0008380 RNA splicing IEP Neighborhood
MF GO:0008897 holo-[acyl-carrier-protein] synthase activity IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016072 rRNA metabolic process IEP Neighborhood
MF GO:0016780 phosphotransferase activity, for other substituted phosphate groups IEP Neighborhood
MF GO:0016840 carbon-nitrogen lyase activity IEP Neighborhood
MF GO:0016842 amidine-lyase activity IEP Neighborhood
CC GO:0031082 BLOC complex IEP Neighborhood
CC GO:0031083 BLOC-1 complex IEP Neighborhood
CC GO:0032991 protein-containing complex IEP Neighborhood
BP GO:0034470 ncRNA processing IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
CC GO:0035145 exon-exon junction complex IEP Neighborhood
BP GO:0042219 cellular modified amino acid catabolic process IEP Neighborhood
BP GO:0043171 peptide catabolic process IEP Neighborhood
CC GO:0043226 organelle IEP Neighborhood
CC GO:0043229 intracellular organelle IEP Neighborhood
BP GO:0043603 cellular amide metabolic process IEP Neighborhood
BP GO:0044273 sulfur compound catabolic process IEP Neighborhood
CC GO:0044424 intracellular part IEP Neighborhood
CC GO:0044444 cytoplasmic part IEP Neighborhood
CC GO:0044445 cytosolic part IEP Neighborhood
CC GO:0044464 cell part IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901565 organonitrogen compound catabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR024766 Znf_RING_H2 51 109
No external refs found!