Description : Pentatricopeptide repeat-containing protein At2g41720 OS=Arabidopsis thaliana (sp|q8rws8|pp199_arath : 692.0)

Gene families : OG0007624 (Archaeplastida) Phylogenetic Tree(s): OG0007624_tree ,
OG_05_0006946 (LandPlants) Phylogenetic Tree(s): OG_05_0006946_tree ,
OG_06_0006926 (SeedPlants) Phylogenetic Tree(s): OG_06_0006926_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type Description Actions
Neighborhood HRR: MA_10429061g0010
Cluster HCCA: Cluster_341

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00159p00058480 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At2g41720... 0.02 Archaeplastida
LOC_Os07g11280.2 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.02 Archaeplastida
Pp3c2_1940V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Archaeplastida
Solyc04g015950.3.1 No alias Pentatricopeptide repeat-containing protein At2g41720... 0.08 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003690 double-stranded DNA binding IEP Neighborhood
MF GO:0003779 actin binding IEP Neighborhood
MF GO:0004177 aminopeptidase activity IEP Neighborhood
MF GO:0004812 aminoacyl-tRNA ligase activity IEP Neighborhood
BP GO:0006399 tRNA metabolic process IEP Neighborhood
BP GO:0006418 tRNA aminoacylation for protein translation IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008238 exopeptidase activity IEP Neighborhood
MF GO:0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups IEP Neighborhood
MF GO:0016874 ligase activity IEP Neighborhood
MF GO:0016875 ligase activity, forming carbon-oxygen bonds IEP Neighborhood
BP GO:0034660 ncRNA metabolic process IEP Neighborhood
BP GO:0043038 amino acid activation IEP Neighborhood
BP GO:0043039 tRNA aminoacylation IEP Neighborhood
MF GO:0140101 catalytic activity, acting on a tRNA IEP Neighborhood
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 13 42
IPR002885 Pentatricopeptide_repeat 436 464
IPR002885 Pentatricopeptide_repeat 183 214
IPR002885 Pentatricopeptide_repeat 292 338
IPR002885 Pentatricopeptide_repeat 362 410
IPR002885 Pentatricopeptide_repeat 114 163
IPR002885 Pentatricopeptide_repeat 222 268
IPR002885 Pentatricopeptide_repeat 466 511
IPR002885 Pentatricopeptide_repeat 44 91
No external refs found!