AT5G12940

Description : Leucine-rich repeat (LRR) family protein

Gene families : OG0000718 (Archaeplastida) Phylogenetic Tree(s): OG0000718_tree ,
OG_05_0000423 (LandPlants) Phylogenetic Tree(s): OG_05_0000423_tree ,
OG_06_0010163 (SeedPlants) Phylogenetic Tree(s): OG_06_0010163_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G12940
Cluster	HCCA: Cluster_250

Target	Alias	Description	ECC score	Gene Family Method
Gb_34782	No alias	MDIS1-interacting receptor like kinase 2 OS=Arabidopsis...	0.05	Archaeplastida
Gb_37822	No alias	Probable leucine-rich repeat receptor-like protein...	0.02	Archaeplastida
Gb_37823	No alias	Probable leucine-rich repeat receptor-like protein...	0.03	Archaeplastida
LOC_Os08g39550.1	No alias	DNA damage-repair/toleration protein DRT100...	0.06	Archaeplastida
MA_100087g0010	No alias	MDIS1-interacting receptor like kinase 2 OS=Arabidopsis...	0.04	Archaeplastida
MA_673492g0010	No alias	MDIS1-interacting receptor like kinase 2 OS=Arabidopsis...	0.03	Archaeplastida
MA_6800g0010	No alias	Leucine-rich repeat receptor-like...	0.02	Archaeplastida
MA_953128g0010	No alias	no hits & (original description: none)	0.03	Archaeplastida
Mp3g16590.1	No alias	MDIS1-interacting receptor like kinase 2 OS=Arabidopsis...	0.04	Archaeplastida
Mp4g21430.1	No alias	LRR receptor-like serine/threonine-protein kinase FLS2...	0.04	Archaeplastida

Type	GO Term	Name	Evidence	Source
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005576	extracellular region	ISM	Interproscan
BP	GO:0007165	signal transduction	IC	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0065007	biological regulation	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004560	alpha-L-fucosidase activity	IEP	Neighborhood
MF	GO:0005199	structural constituent of cell wall	IEP	Neighborhood
MF	GO:0005488	binding	IEP	Neighborhood
MF	GO:0005507	copper ion binding	IEP	Neighborhood
CC	GO:0005618	cell wall	IEP	Neighborhood
CC	GO:0005819	spindle	IEP	Neighborhood
CC	GO:0005856	cytoskeleton	IEP	Neighborhood
CC	GO:0005886	plasma membrane	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006073	cellular glucan metabolic process	IEP	Neighborhood
BP	GO:0006084	acetyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0006163	purine nucleotide metabolic process	IEP	Neighborhood
BP	GO:0006598	polyamine catabolic process	IEP	Neighborhood
BP	GO:0006629	lipid metabolic process	IEP	Neighborhood
BP	GO:0006637	acyl-CoA metabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006732	coenzyme metabolic process	IEP	Neighborhood
BP	GO:0006753	nucleoside phosphate metabolic process	IEP	Neighborhood
BP	GO:0006790	sulfur compound metabolic process	IEP	Neighborhood
BP	GO:0006825	copper ion transport	IEP	Neighborhood
BP	GO:0006869	lipid transport	IEP	Neighborhood
BP	GO:0008154	actin polymerization or depolymerization	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008289	lipid binding	IEP	Neighborhood
BP	GO:0008610	lipid biosynthetic process	IEP	Neighborhood
BP	GO:0009058	biosynthetic process	IEP	Neighborhood
BP	GO:0009117	nucleotide metabolic process	IEP	Neighborhood
BP	GO:0009150	purine ribonucleotide metabolic process	IEP	Neighborhood
BP	GO:0009259	ribonucleotide metabolic process	IEP	Neighborhood
CC	GO:0009504	cell plate	IEP	Neighborhood
CC	GO:0009505	plant-type cell wall	IEP	Neighborhood
BP	GO:0009608	response to symbiont	IEP	Neighborhood
BP	GO:0009610	response to symbiotic fungus	IEP	Neighborhood
BP	GO:0009650	UV protection	IEP	Neighborhood
BP	GO:0010075	regulation of meristem growth	IEP	Neighborhood
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0010393	galacturonan metabolic process	IEP	Neighborhood
BP	GO:0010410	hemicellulose metabolic process	IEP	Neighborhood
BP	GO:0010411	xyloglucan metabolic process	IEP	Neighborhood
BP	GO:0010817	regulation of hormone levels	IEP	Neighborhood
CC	GO:0015629	actin cytoskeleton	IEP	Neighborhood
MF	GO:0015928	fucosidase activity	IEP	Neighborhood
CC	GO:0016020	membrane	IEP	Neighborhood
BP	GO:0016125	sterol metabolic process	IEP	Neighborhood
BP	GO:0016126	sterol biosynthetic process	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	IEP	Neighborhood
BP	GO:0019637	organophosphate metabolic process	IEP	Neighborhood
BP	GO:0019693	ribose phosphate metabolic process	IEP	Neighborhood
BP	GO:0030243	cellulose metabolic process	IEP	Neighborhood
CC	GO:0030312	external encapsulating structure	IEP	Neighborhood
CC	GO:0031224	intrinsic component of membrane	IEP	Neighborhood
CC	GO:0031225	anchored component of membrane	IEP	Neighborhood
CC	GO:0031226	intrinsic component of plasma membrane	IEP	Neighborhood
BP	GO:0033865	nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	IEP	Neighborhood
BP	GO:0035383	thioester metabolic process	IEP	Neighborhood
BP	GO:0042445	hormone metabolic process	IEP	Neighborhood
BP	GO:0042446	hormone biosynthetic process	IEP	Neighborhood
MF	GO:0043167	ion binding	IEP	Neighborhood
MF	GO:0043169	cation binding	IEP	Neighborhood
BP	GO:0043603	cellular amide metabolic process	IEP	Neighborhood
BP	GO:0044036	cell wall macromolecule metabolic process	IEP	Neighborhood
BP	GO:0044042	glucan metabolic process	IEP	Neighborhood
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	Neighborhood
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	Neighborhood
CC	GO:0044425	membrane part	IEP	Neighborhood
CC	GO:0044459	plasma membrane part	IEP	Neighborhood
BP	GO:0045488	pectin metabolic process	IEP	Neighborhood
CC	GO:0046658	anchored component of plasma membrane	IEP	Neighborhood
BP	GO:0046685	response to arsenic-containing substance	IEP	Neighborhood
MF	GO:0046872	metal ion binding	IEP	Neighborhood
MF	GO:0047513	1,2-alpha-L-fucosidase activity	IEP	Neighborhood
BP	GO:0048509	regulation of meristem development	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048638	regulation of developmental growth	IEP	Neighborhood
BP	GO:0051186	cofactor metabolic process	IEP	Neighborhood
BP	GO:0051273	beta-glucan metabolic process	IEP	Neighborhood
BP	GO:0052541	plant-type cell wall cellulose metabolic process	IEP	Neighborhood
BP	GO:0052546	cell wall pectin metabolic process	IEP	Neighborhood
BP	GO:0055086	nucleobase-containing small molecule metabolic process	IEP	Neighborhood
BP	GO:0065008	regulation of biological quality	IEP	Neighborhood
BP	GO:0072521	purine-containing compound metabolic process	IEP	Neighborhood
BP	GO:1901135	carbohydrate derivative metabolic process	IEP	Neighborhood
BP	GO:1901360	organic cyclic compound metabolic process	IEP	Neighborhood
BP	GO:1901362	organic cyclic compound biosynthetic process	IEP	Neighborhood
BP	GO:1901576	organic substance biosynthetic process	IEP	Neighborhood
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	Neighborhood
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001611	Leu-rich_rpt	231	289
IPR001611	Leu-rich_rpt	159	218
IPR013210	LRR_N_plant-typ	29	68
IPR001611	Leu-rich_rpt	136	157

External Links

No external refs found!

AT5G12940

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation