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  5. AT5G13600

AT5G13600


Description : Phototropic-responsive NPH3 family protein


Gene families : OG0000044 (Archaeplastida) Phylogenetic Tree(s): OG0000044_tree ,
OG_05_0000474 (LandPlants) Phylogenetic Tree(s): OG_05_0000474_tree ,
OG_06_0041011 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G13600
Cluster HCCA: Cluster_218

Target Alias Description ECC score Gene Family Method Actions
AT1G30440 No alias Phototropic-responsive NPH3 family protein 0.04 Archaeplastida
AT3G03510 No alias Phototropic-responsive NPH3 family protein 0.12 Archaeplastida
AT5G17580 No alias Phototropic-responsive NPH3 family protein 0.11 Archaeplastida
GSVIVT01027413001 No alias BTB/POZ domain-containing protein At5g17580... 0.03 Archaeplastida
Pp3c3_37660V3.1 No alias Phototropic-responsive NPH3 family protein 0.02 Archaeplastida
Pp3c6_12160V3.1 No alias Phototropic-responsive NPH3 family protein 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0004871 obsolete signal transducer activity ISS Interproscan
CC GO:0005886 plasma membrane ISM Interproscan
BP GO:0009416 response to light stimulus ISS Interproscan
CC GO:0016020 membrane IDA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding IEP Neighborhood
CC GO:0005852 eukaryotic translation initiation factor 3 complex IEP Neighborhood
BP GO:0006310 DNA recombination IEP Neighborhood
BP GO:0007059 chromosome segregation IEP Neighborhood
BP GO:0007129 synapsis IEP Neighborhood
BP GO:0007131 reciprocal meiotic recombination IEP Neighborhood
BP GO:0010098 suspensor development IEP Neighborhood
BP GO:0010214 seed coat development IEP Neighborhood
BP GO:0010222 stem vascular tissue pattern formation IEP Neighborhood
BP GO:0010588 cotyledon vascular tissue pattern formation IEP Neighborhood
BP GO:0032504 multicellular organism reproduction IEP Neighborhood
BP GO:0035825 homologous recombination IEP Neighborhood
BP GO:0042138 meiotic DNA double-strand break formation IEP Neighborhood
MF GO:0045735 nutrient reservoir activity IEP Neighborhood
BP GO:0048598 embryonic morphogenesis IEP Neighborhood
BP GO:0051276 chromosome organization IEP Neighborhood
BP GO:0061982 meiosis I cell cycle process IEP Neighborhood
BP GO:0070192 chromosome organization involved in meiotic cell cycle IEP Neighborhood
BP GO:0080159 zygote elongation IEP Neighborhood
BP GO:0090305 nucleic acid phosphodiester bond hydrolysis IEP Neighborhood
BP GO:1903046 meiotic cell cycle process IEP Neighborhood
InterPro domains Description Start Stop
IPR000210 BTB/POZ_dom 27 111
IPR027356 NPH3_dom 208 469
No external refs found!