AT5G14340 (AtMYB40, MYB40)

Aliases : AtMYB40, MYB40

Description : myb domain protein 40

Gene families : OG0000002 (Archaeplastida) Phylogenetic Tree(s): No tree available for this family ,
OG_05_0000002 (LandPlants) Phylogenetic Tree(s): OG_05_0000002_tree ,
OG_06_0000296 (SeedPlants) Phylogenetic Tree(s): OG_06_0000296_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G14340
Cluster	HCCA: Cluster_93

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00006p00267240	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00010p00264600	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
AMTR_s00010p00267100	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00019p00201260	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
AMTR_s00024p00224850	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00037p00177500	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.05	Archaeplastida
AMTR_s00039p00172240	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00044p00189590	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00045p00146180	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AMTR_s00076p00157170	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
AT1G18570	AtMYB51, BW51B,...	myb domain protein 51	0.05	Archaeplastida
AT1G74080	ATMYB122, MYB122	myb domain protein 122	0.06	Archaeplastida
AT1G74650	ATMYB31, MYB31, ATY13	myb domain protein 31	0.03	Archaeplastida
AT2G02820	MYB88, AtMYB88	myb domain protein 88	0.03	Archaeplastida
AT2G47460	ATMYB12, PFG1, MYB12	myb domain protein 12	0.07	Archaeplastida
AT3G08500	AtMYB83, MYB83	myb domain protein 83	0.05	Archaeplastida
AT3G27785	PGA37, ATMYB118, MYB118	myb domain protein 118	0.03	Archaeplastida
AT3G53200	AtMYB27, MYB27	myb domain protein 27	0.06	Archaeplastida
AT4G01680	MYB55, AtMYB55	myb domain protein 55	0.04	Archaeplastida
AT4G17785	MYB39	myb domain protein 39	0.05	Archaeplastida
AT4G26930	AtMYB97, MYB97	myb domain protein 97	0.03	Archaeplastida
AT4G33450	ATMYB69, MYB69	myb domain protein 69	0.03	Archaeplastida
GSVIVT01007670001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.04	Archaeplastida
GSVIVT01008303001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01011447001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01015102001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.01	Archaeplastida
GSVIVT01018234001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01018577001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01024774001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01025269001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01028235001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01031341001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01032088001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01032467001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.01	Archaeplastida
GSVIVT01032564001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01035463001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.03	Archaeplastida
GSVIVT01036802001	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
Gb_02997	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_25814	No alias	transcription factor (MYB)	0.02	Archaeplastida
Gb_34388	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os01g07450.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os01g18240.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os02g02370.1	No alias	transcription factor (MYB)	0.05	Archaeplastida
LOC_Os02g42850.2	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os02g42870.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os02g46780.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os02g51799.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os03g04900.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os03g56090.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os04g42950.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os04g50770.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os05g04820.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os06g11780.1	No alias	transcription factor (MYB)	0.01	Archaeplastida
LOC_Os06g46560.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os07g37210.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os07g44090.3	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os08g05520.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
LOC_Os08g33800.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os08g37970.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os09g36730.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
LOC_Os11g03440.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os12g03150.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
LOC_Os12g37690.1	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_1261g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_129382g0010	No alias	transcription factor (MYB)	0.01	Archaeplastida
MA_246817g0010	No alias	transcription factor (MYB)	0.01	Archaeplastida
MA_278282g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_308669g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_3665g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
MA_37851g0010	No alias	transcription factor (MYB)	0.03	Archaeplastida
MA_6285g0010	No alias	transcription factor (MYB)	0.02	Archaeplastida
Mp1g09420.1	No alias	transcription factor (MYB)	0.04	Archaeplastida
Pp3c25_3170V3.1	No alias	myb domain protein 16	0.02	Archaeplastida
Pp3c2_34670V3.1	No alias	myb domain protein 105	0.03	Archaeplastida
Pp3c6_9970V3.1	No alias	myb domain protein 106	0.02	Archaeplastida
Pp3c7_23450V3.1	No alias	myb domain protein 106	0.04	Archaeplastida
Pp3c9_24170V3.1	No alias	myb domain protein 33	0.03	Archaeplastida
Smo84608	No alias	RNA biosynthesis.transcriptional activation.MYB...	0.02	Archaeplastida
Solyc01g010910.2.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc01g087130.4.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc02g089190.2.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc02g093740.3.1	No alias	transcription factor (MYB)	0.06	Archaeplastida
Solyc03g005570.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc03g025870.3.1	No alias	transcription factor (MYB)	0.07	Archaeplastida
Solyc04g056310.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc04g077260.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc05g014290.4.1	No alias	transcription factor (MYB)	0.08	Archaeplastida
Solyc06g074910.3.1	No alias	transcription factor (MYB)	0.07	Archaeplastida
Solyc07g052300.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc08g076710.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc09g008250.4.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc09g090790.3.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc10g008700.3.1	No alias	No annotation	0.03	Archaeplastida
Solyc10g081490.2.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc12g005890.3.1	No alias	Transcription factor MYB101 OS=Arabidopsis thaliana...	0.03	Archaeplastida
Solyc12g099130.2.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Solyc12g099140.2.1	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e005823_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e008489_P001	No alias	transcription factor (MYB)	0.05	Archaeplastida
Zm00001e011944_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e012681_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e012960_P002	No alias	transcription factor (MYB)	0.05	Archaeplastida
Zm00001e013452_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e017428_P003	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e020754_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e022280_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e023733_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e024037_P001	No alias	transcription factor (MYB)	0.04	Archaeplastida
Zm00001e026426_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida
Zm00001e030314_P001	No alias	transcription factor (MYB)	0.05	Archaeplastida
Zm00001e031799_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e034807_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e035993_P001	No alias	transcription factor (MYB)	0.02	Archaeplastida
Zm00001e040384_P001	No alias	transcription factor (MYB)	0.03	Archaeplastida

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISS	Interproscan
MF	GO:0003700	DNA-binding transcription factor activity	ISS	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	Interproscan
BP	GO:0006355	regulation of transcription, DNA-templated	ISS	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
BP	GO:0000041	transition metal ion transport	IEP	Neighborhood
BP	GO:0000271	polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0000904	cell morphogenesis involved in differentiation	IEP	Neighborhood
MF	GO:0003824	catalytic activity	IEP	Neighborhood
MF	GO:0005088	Ras guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005089	Rho guanyl-nucleotide exchange factor activity	IEP	Neighborhood
MF	GO:0005548	phospholipid transporter activity	IEP	Neighborhood
CC	GO:0005622	intracellular	IEP	Neighborhood
CC	GO:0005794	Golgi apparatus	IEP	Neighborhood
BP	GO:0005976	polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0006694	steroid biosynthetic process	IEP	Neighborhood
BP	GO:0006811	ion transport	IEP	Neighborhood
BP	GO:0006812	cation transport	IEP	Neighborhood
BP	GO:0006826	iron ion transport	IEP	Neighborhood
MF	GO:0008146	sulfotransferase activity	IEP	Neighborhood
BP	GO:0008202	steroid metabolic process	IEP	Neighborhood
MF	GO:0008417	fucosyltransferase activity	IEP	Neighborhood
MF	GO:0008493	tetracycline transmembrane transporter activity	IEP	Neighborhood
MF	GO:0008526	phosphatidylinositol transporter activity	IEP	Neighborhood
CC	GO:0009531	secondary cell wall	IEP	Neighborhood
BP	GO:0009739	response to gibberellin	IEP	Neighborhood
BP	GO:0009749	response to glucose	IEP	Neighborhood
BP	GO:0009785	blue light signaling pathway	IEP	Neighborhood
BP	GO:0009812	flavonoid metabolic process	IEP	Neighborhood
BP	GO:0010053	root epidermal cell differentiation	IEP	Neighborhood
BP	GO:0010054	trichoblast differentiation	IEP	Neighborhood
BP	GO:0010106	cellular response to iron ion starvation	IEP	Neighborhood
BP	GO:0010167	response to nitrate	IEP	Neighborhood
BP	GO:0010383	cell wall polysaccharide metabolic process	IEP	Neighborhood
BP	GO:0010410	hemicellulose metabolic process	IEP	Neighborhood
BP	GO:0010413	glucuronoxylan metabolic process	IEP	Neighborhood
MF	GO:0015665	alcohol transmembrane transporter activity	IEP	Neighborhood
BP	GO:0015698	inorganic anion transport	IEP	Neighborhood
BP	GO:0015706	nitrate transport	IEP	Neighborhood
BP	GO:0016049	cell growth	IEP	Neighborhood
BP	GO:0016128	phytosteroid metabolic process	IEP	Neighborhood
BP	GO:0016129	phytosteroid biosynthetic process	IEP	Neighborhood
BP	GO:0016131	brassinosteroid metabolic process	IEP	Neighborhood
BP	GO:0016132	brassinosteroid biosynthetic process	IEP	Neighborhood
MF	GO:0016301	kinase activity	IEP	Neighborhood
MF	GO:0016307	phosphatidylinositol phosphate kinase activity	IEP	Neighborhood
MF	GO:0016308	1-phosphatidylinositol-4-phosphate 5-kinase activity	IEP	Neighborhood
CC	GO:0016324	apical plasma membrane	IEP	Neighborhood
MF	GO:0016740	transferase activity	IEP	Neighborhood
MF	GO:0016757	transferase activity, transferring glycosyl groups	IEP	Neighborhood
MF	GO:0016758	transferase activity, transferring hexosyl groups	IEP	Neighborhood
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	Neighborhood
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	Neighborhood
MF	GO:0016782	transferase activity, transferring sulfur-containing groups	IEP	Neighborhood
MF	GO:0017048	Rho GTPase binding	IEP	Neighborhood
BP	GO:0021700	developmental maturation	IEP	Neighborhood
BP	GO:0030001	metal ion transport	IEP	Neighborhood
BP	GO:0030154	cell differentiation	IEP	Neighborhood
BP	GO:0030522	intracellular receptor signaling pathway	IEP	Neighborhood
BP	GO:0032502	developmental process	IEP	Neighborhood
BP	GO:0040007	growth	IEP	Neighborhood
MF	GO:0042895	antibiotic transmembrane transporter activity	IEP	Neighborhood
BP	GO:0044038	cell wall macromolecule biosynthetic process	IEP	Neighborhood
MF	GO:0045431	flavonol synthase activity	IEP	Neighborhood
BP	GO:0045491	xylan metabolic process	IEP	Neighborhood
BP	GO:0045492	xylan biosynthetic process	IEP	Neighborhood
BP	GO:0048364	root development	IEP	Neighborhood
BP	GO:0048469	cell maturation	IEP	Neighborhood
BP	GO:0048527	lateral root development	IEP	Neighborhood
BP	GO:0048528	post-embryonic root development	IEP	Neighborhood
BP	GO:0048588	developmental cell growth	IEP	Neighborhood
BP	GO:0048589	developmental growth	IEP	Neighborhood
BP	GO:0048764	trichoblast maturation	IEP	Neighborhood
BP	GO:0048765	root hair cell differentiation	IEP	Neighborhood
BP	GO:0048766	root hair initiation	IEP	Neighborhood
BP	GO:0048767	root hair elongation	IEP	Neighborhood
BP	GO:0048768	root hair cell tip growth	IEP	Neighborhood
BP	GO:0048869	cellular developmental process	IEP	Neighborhood
BP	GO:0060560	developmental growth involved in morphogenesis	IEP	Neighborhood
BP	GO:0070589	cellular component macromolecule biosynthetic process	IEP	Neighborhood
BP	GO:0070592	cell wall polysaccharide biosynthetic process	IEP	Neighborhood
BP	GO:0071695	anatomical structure maturation	IEP	Neighborhood
MF	GO:0080044	quercetin 7-O-glucosyltransferase activity	IEP	Neighborhood
MF	GO:0080045	quercetin 3'-O-glucosyltransferase activity	IEP	Neighborhood
BP	GO:0090627	plant epidermal cell differentiation	IEP	Neighborhood
BP	GO:0090696	post-embryonic plant organ development	IEP	Neighborhood
BP	GO:0099402	plant organ development	IEP	Neighborhood
MF	GO:1901618	organic hydroxy compound transmembrane transporter activity	IEP	Neighborhood
MF	GO:1990135	flavonoid sulfotransferase activity	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001005	SANT/Myb	67	110
IPR001005	SANT/Myb	14	61

External Links

No external refs found!

AT5G14340 (AtMYB40, MYB40)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation