1. Home
  2. Species
  3. Picea abies
  4. Sequence
  5. MA_10430844g0010

MA_10430844g0010


Description : exoribonuclease (RAT1/XRN2)


Gene families : OG0000811 (Archaeplastida) Phylogenetic Tree(s): OG0000811_tree ,
OG_05_0000830 (LandPlants) Phylogenetic Tree(s): OG_05_0000830_tree ,
OG_06_0002236 (SeedPlants) Phylogenetic Tree(s): OG_06_0002236_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10430844g0010
Cluster HCCA: Cluster_412

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00046450 evm_27.TU.AmTr_v1... RNA processing.RNA decay.deadenylation-dependent... 0.03 Archaeplastida
AMTR_s00491p00000370 evm_27.TU.AmTr_v1... 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.04 Archaeplastida
AT1G75660 XRN3, AtXRN3 5'-3' exoribonuclease 3 0.04 Archaeplastida
Cre03.g152100 No alias 5-3 exoribonuclease 4 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre16.g679900 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
GSVIVT01009879001 No alias RNA biosynthesis.RNA polymerase II-dependent... 0.06 Archaeplastida
GSVIVT01021865001 No alias RNA processing.RNA decay.deadenylation-dependent... 0.03 Archaeplastida
Gb_09607 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
LOC_Os01g65220.1 No alias exoribonuclease (RAT1/XRN2) 0.03 Archaeplastida
MA_17503g0010 No alias 5-3 exoribonuclease 3 OS=Arabidopsis thaliana... 0.03 Archaeplastida
Mp3g08820.1 No alias exoribonuclease (RAT1/XRN2) 0.04 Archaeplastida
Pp3c24_2160V3.1 No alias 5\-3\ exoribonuclease 3 0.03 Archaeplastida
Solyc04g081280.3.1 No alias exoribonuclease (RAT1/XRN2) 0.06 Archaeplastida
Solyc12g089280.2.1 No alias exoribonuclease (RAT1/XRN2) 0.03 Archaeplastida
Zm00001e011879_P001 No alias EBF-modulating exoribonuclease (EIN5/XRN4).... 0.02 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA Interproscan
MF GO:0004527 exonuclease activity IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000148 1,3-beta-D-glucan synthase complex IEP Neighborhood
MF GO:0000166 nucleotide binding IEP Neighborhood
MF GO:0003682 chromatin binding IEP Neighborhood
MF GO:0003697 single-stranded DNA binding IEP Neighborhood
MF GO:0003843 1,3-beta-D-glucan synthase activity IEP Neighborhood
MF GO:0005096 GTPase activator activity IEP Neighborhood
MF GO:0005515 protein binding IEP Neighborhood
MF GO:0005524 ATP binding IEP Neighborhood
CC GO:0005667 transcription factor complex IEP Neighborhood
CC GO:0005669 transcription factor TFIID complex IEP Neighborhood
BP GO:0006074 (1->3)-beta-D-glucan metabolic process IEP Neighborhood
BP GO:0006075 (1->3)-beta-D-glucan biosynthetic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0007010 cytoskeleton organization IEP Neighborhood
BP GO:0007186 G-protein coupled receptor signaling pathway IEP Neighborhood
MF GO:0008047 enzyme activator activity IEP Neighborhood
MF GO:0008092 cytoskeletal protein binding IEP Neighborhood
MF GO:0008144 drug binding IEP Neighborhood
MF GO:0015631 tubulin binding IEP Neighborhood
MF GO:0017076 purine nucleotide binding IEP Neighborhood
MF GO:0030554 adenyl nucleotide binding IEP Neighborhood
MF GO:0030695 GTPase regulator activity IEP Neighborhood
MF GO:0031683 G-protein beta/gamma-subunit complex binding IEP Neighborhood
MF GO:0032559 adenyl ribonucleotide binding IEP Neighborhood
MF GO:0035639 purine ribonucleoside triphosphate binding IEP Neighborhood
MF GO:0036094 small molecule binding IEP Neighborhood
MF GO:0043015 gamma-tubulin binding IEP Neighborhood
CC GO:0044459 plasma membrane part IEP Neighborhood
CC GO:0044798 nuclear transcription factor complex IEP Neighborhood
MF GO:0044877 protein-containing complex binding IEP Neighborhood
BP GO:0050789 regulation of biological process IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
MF GO:0060589 nucleoside-triphosphatase regulator activity IEP Neighborhood
BP GO:0065007 biological regulation IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
CC GO:0090575 RNA polymerase II transcription factor complex IEP Neighborhood
CC GO:0098797 plasma membrane protein complex IEP Neighborhood
MF GO:1901265 nucleoside phosphate binding IEP Neighborhood
InterPro domains Description Start Stop
IPR004859 Put_53exo 112 364
No external refs found!