AT5G15850 (COL1, ATCOL1)


Aliases : COL1, ATCOL1

Description : CONSTANS-like 1


Gene families : OG0000859 (Archaeplastida) Phylogenetic Tree(s): OG0000859_tree ,
OG_05_0001138 (LandPlants) Phylogenetic Tree(s): OG_05_0001138_tree ,
OG_06_0001151 (SeedPlants) Phylogenetic Tree(s): OG_06_0001151_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: AT5G15850
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00006p00262710 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.C2C2... 0.08 Archaeplastida
Cre06.g278159 No alias Zinc finger protein CONSTANS-LIKE 3 OS=Arabidopsis thaliana 0.02 Archaeplastida
Cre12.g534100 No alias No description available 0.03 Archaeplastida
GSVIVT01029107001 No alias Zinc finger protein CONSTANS-LIKE 4 OS=Arabidopsis thaliana 0.1 Archaeplastida
GSVIVT01036037001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.06 Archaeplastida
GSVIVT01036499001 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.09 Archaeplastida
LOC_Os02g08150.1 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.03 Archaeplastida
LOC_Os02g39710.1 No alias transcription factor (BBX-CO) 0.1 Archaeplastida
LOC_Os06g44450.1 No alias Zinc finger protein CONSTANS-LIKE 2 OS=Arabidopsis... 0.05 Archaeplastida
LOC_Os10g41100.1 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.07 Archaeplastida
MA_54929g0010 No alias transcription factor (BBX-CO) 0.03 Archaeplastida
MA_7292g0010 No alias transcription factor (BBX-CO) 0.04 Archaeplastida
Mp8g13470.1 No alias transcription factor (BBX-CO) 0.05 Archaeplastida
Pp3c2_31580V3.1 No alias CONSTANS-like 4 0.03 Archaeplastida
Pp3c7_25600V3.1 No alias CONSTANS-like 4 0.06 Archaeplastida
Smo185898 No alias RNA biosynthesis.transcriptional activation.C2C2... 0.11 Archaeplastida
Solyc02g089540.3.1 No alias transcription factor (BBX-CO) 0.1 Archaeplastida
Solyc07g006630.4.1 No alias no hits & (original description: none) 0.06 Archaeplastida
Zm00001e002319_P001 No alias Transcription factor GHD7 OS=Oryza sativa subsp.... 0.06 Archaeplastida
Zm00001e007691_P001 No alias transcription factor (BBX-CO) 0.06 Archaeplastida
Zm00001e013804_P001 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.03 Archaeplastida
Zm00001e037706_P002 No alias Zinc finger protein CONSTANS-LIKE 5 OS=Arabidopsis... 0.05 Archaeplastida
Zm00001e037873_P001 No alias no hits & (original description: none) 0.07 Archaeplastida
Zm00001e041152_P001 No alias transcription factor (BBX-CO) 0.05 Archaeplastida

Type GO Term Name Evidence Source
MF GO:0003700 DNA-binding transcription factor activity ISS Interproscan
MF GO:0005515 protein binding IPI Interproscan
CC GO:0005634 nucleus ISM Interproscan
BP GO:0006281 DNA repair RCA Interproscan
BP GO:0007623 circadian rhythm IMP Interproscan
MF GO:0008270 zinc ion binding ISS Interproscan
BP GO:0009909 regulation of flower development IMP Interproscan
BP GO:0010100 negative regulation of photomorphogenesis RCA Interproscan
MF GO:0042802 identical protein binding IPI Interproscan
BP GO:0048608 reproductive structure development RCA Interproscan
Type GO Term Name Evidence Source
MF GO:0001067 regulatory region nucleic acid binding IEP Neighborhood
BP GO:0001101 response to acid chemical IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003677 DNA binding IEP Neighborhood
MF GO:0004021 L-alanine:2-oxoglutarate aminotransferase activity IEP Neighborhood
MF GO:0004069 L-aspartate:2-oxoglutarate aminotransferase activity IEP Neighborhood
MF GO:0004096 catalase activity IEP Neighborhood
MF GO:0004176 ATP-dependent peptidase activity IEP Neighborhood
MF GO:0005310 dicarboxylic acid transmembrane transporter activity IEP Neighborhood
MF GO:0005343 organic acid:sodium symporter activity IEP Neighborhood
CC GO:0005773 vacuole IEP Neighborhood
CC GO:0005777 peroxisome IEP Neighborhood
CC GO:0005884 actin filament IEP Neighborhood
BP GO:0006066 alcohol metabolic process IEP Neighborhood
BP GO:0006206 pyrimidine nucleobase metabolic process IEP Neighborhood
BP GO:0006352 DNA-templated transcription, initiation IEP Neighborhood
BP GO:0006355 regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0006473 protein acetylation IEP Neighborhood
BP GO:0006475 internal protein amino acid acetylation IEP Neighborhood
BP GO:0006534 cysteine metabolic process IEP Neighborhood
BP GO:0006793 phosphorus metabolic process IEP Neighborhood
BP GO:0006796 phosphate-containing compound metabolic process IEP Neighborhood
BP GO:0006809 nitric oxide biosynthetic process IEP Neighborhood
BP GO:0006835 dicarboxylic acid transport IEP Neighborhood
BP GO:0006873 cellular ion homeostasis IEP Neighborhood
BP GO:0006885 regulation of pH IEP Neighborhood
BP GO:0006970 response to osmotic stress IEP Neighborhood
BP GO:0006995 cellular response to nitrogen starvation IEP Neighborhood
BP GO:0006996 organelle organization IEP Neighborhood
BP GO:0007015 actin filament organization IEP Neighborhood
MF GO:0008453 alanine-glyoxylate transaminase activity IEP Neighborhood
MF GO:0008483 transaminase activity IEP Neighborhood
BP GO:0008655 pyrimidine-containing compound salvage IEP Neighborhood
MF GO:0008793 aromatic-amino-acid:2-oxoglutarate aminotransferase activity IEP Neighborhood
MF GO:0008940 nitrate reductase activity IEP Neighborhood
BP GO:0009058 biosynthetic process IEP Neighborhood
BP GO:0009069 serine family amino acid metabolic process IEP Neighborhood
BP GO:0009070 serine family amino acid biosynthetic process IEP Neighborhood
BP GO:0009112 nucleobase metabolic process IEP Neighborhood
BP GO:0009266 response to temperature stimulus IEP Neighborhood
BP GO:0009269 response to desiccation IEP Neighborhood
BP GO:0009314 response to radiation IEP Neighborhood
BP GO:0009409 response to cold IEP Neighborhood
BP GO:0009411 response to UV IEP Neighborhood
BP GO:0009416 response to light stimulus IEP Neighborhood
BP GO:0009566 fertilization IEP Neighborhood
BP GO:0009567 double fertilization forming a zygote and endosperm IEP Neighborhood
BP GO:0009605 response to external stimulus IEP Neighborhood
BP GO:0009608 response to symbiont IEP Neighborhood
BP GO:0009610 response to symbiotic fungus IEP Neighborhood
BP GO:0009628 response to abiotic stimulus IEP Neighborhood
BP GO:0009637 response to blue light IEP Neighborhood
BP GO:0009638 phototropism IEP Neighborhood
BP GO:0009639 response to red or far red light IEP Neighborhood
BP GO:0009648 photoperiodism IEP Neighborhood
BP GO:0009651 response to salt stress IEP Neighborhood
BP GO:0009657 plastid organization IEP Neighborhood
BP GO:0009658 chloroplast organization IEP Neighborhood
MF GO:0009703 nitrate reductase (NADH) activity IEP Neighborhood
BP GO:0009719 response to endogenous stimulus IEP Neighborhood
BP GO:0009723 response to ethylene IEP Neighborhood
BP GO:0009725 response to hormone IEP Neighborhood
BP GO:0009733 response to auxin IEP Neighborhood
BP GO:0009737 response to abscisic acid IEP Neighborhood
BP GO:0009739 response to gibberellin IEP Neighborhood
BP GO:0009751 response to salicylic acid IEP Neighborhood
BP GO:0009753 response to jasmonic acid IEP Neighborhood
BP GO:0009838 abscission IEP Neighborhood
BP GO:0009889 regulation of biosynthetic process IEP Neighborhood
BP GO:0009891 positive regulation of biosynthetic process IEP Neighborhood
BP GO:0009893 positive regulation of metabolic process IEP Neighborhood
BP GO:0009902 chloroplast relocation IEP Neighborhood
BP GO:0009903 chloroplast avoidance movement IEP Neighborhood
BP GO:0009904 chloroplast accumulation movement IEP Neighborhood
BP GO:0009954 proximal/distal pattern formation IEP Neighborhood
BP GO:0009970 cellular response to sulfate starvation IEP Neighborhood
BP GO:0010033 response to organic substance IEP Neighborhood
BP GO:0010038 response to metal ion IEP Neighborhood
BP GO:0010227 floral organ abscission IEP Neighborhood
BP GO:0010236 plastoquinone biosynthetic process IEP Neighborhood
BP GO:0010264 myo-inositol hexakisphosphate biosynthetic process IEP Neighborhood
BP GO:0010304 PSII associated light-harvesting complex II catabolic process IEP Neighborhood
CC GO:0010319 stromule IEP Neighborhood
BP GO:0010468 regulation of gene expression IEP Neighborhood
BP GO:0010556 regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010557 positive regulation of macromolecule biosynthetic process IEP Neighborhood
BP GO:0010600 regulation of auxin biosynthetic process IEP Neighborhood
BP GO:0010604 positive regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010628 positive regulation of gene expression IEP Neighborhood
BP GO:0014070 response to organic cyclic compound IEP Neighborhood
MF GO:0015140 malate transmembrane transporter activity IEP Neighborhood
MF GO:0015205 nucleobase transmembrane transporter activity IEP Neighborhood
MF GO:0015370 solute:sodium symporter activity IEP Neighborhood
MF GO:0015556 C4-dicarboxylate transmembrane transporter activity IEP Neighborhood
BP GO:0015740 C4-dicarboxylate transport IEP Neighborhood
BP GO:0015743 malate transport IEP Neighborhood
BP GO:0016042 lipid catabolic process IEP Neighborhood
BP GO:0016573 histone acetylation IEP Neighborhood
MF GO:0016661 oxidoreductase activity, acting on other nitrogenous compounds as donors IEP Neighborhood
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP Neighborhood
MF GO:0016726 oxidoreductase activity, acting on CH or CH2 groups, NAD or NADP as acceptor IEP Neighborhood
MF GO:0016769 transferase activity, transferring nitrogenous groups IEP Neighborhood
MF GO:0016846 carbon-sulfur lyase activity IEP Neighborhood
MF GO:0016847 1-aminocyclopropane-1-carboxylate synthase activity IEP Neighborhood
MF GO:0016987 sigma factor activity IEP Neighborhood
BP GO:0017001 antibiotic catabolic process IEP Neighborhood
BP GO:0017144 drug metabolic process IEP Neighborhood
MF GO:0017153 sodium:dicarboxylate symporter activity IEP Neighborhood
BP GO:0018393 internal peptidyl-lysine acetylation IEP Neighborhood
BP GO:0018394 peptidyl-lysine acetylation IEP Neighborhood
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0019222 regulation of metabolic process IEP Neighborhood
BP GO:0019344 cysteine biosynthetic process IEP Neighborhood
BP GO:0019637 organophosphate metabolic process IEP Neighborhood
BP GO:0019725 cellular homeostasis IEP Neighborhood
BP GO:0019750 chloroplast localization IEP Neighborhood
BP GO:0019751 polyol metabolic process IEP Neighborhood
BP GO:0019856 pyrimidine nucleobase biosynthetic process IEP Neighborhood
MF GO:0019904 protein domain specific binding IEP Neighborhood
BP GO:0030001 metal ion transport IEP Neighborhood
BP GO:0030003 cellular cation homeostasis IEP Neighborhood
BP GO:0030004 cellular monovalent inorganic cation homeostasis IEP Neighborhood
BP GO:0030641 regulation of cellular pH IEP Neighborhood
BP GO:0031323 regulation of cellular metabolic process IEP Neighborhood
BP GO:0031325 positive regulation of cellular metabolic process IEP Neighborhood
BP GO:0031326 regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0031328 positive regulation of cellular biosynthetic process IEP Neighborhood
BP GO:0032350 regulation of hormone metabolic process IEP Neighborhood
BP GO:0032922 circadian regulation of gene expression IEP Neighborhood
BP GO:0032958 inositol phosphate biosynthetic process IEP Neighborhood
BP GO:0033517 myo-inositol hexakisphosphate metabolic process IEP Neighborhood
BP GO:0033993 response to lipid IEP Neighborhood
BP GO:0042126 nitrate metabolic process IEP Neighborhood
BP GO:0042128 nitrate assimilation IEP Neighborhood
BP GO:0042136 neurotransmitter biosynthetic process IEP Neighborhood
BP GO:0042181 ketone biosynthetic process IEP Neighborhood
BP GO:0042221 response to chemical IEP Neighborhood
BP GO:0042493 response to drug IEP Neighborhood
CC GO:0042579 microbody IEP Neighborhood
BP GO:0042592 homeostatic process IEP Neighborhood
BP GO:0042737 drug catabolic process IEP Neighborhood
BP GO:0042743 hydrogen peroxide metabolic process IEP Neighborhood
BP GO:0042744 hydrogen peroxide catabolic process IEP Neighborhood
BP GO:0042752 regulation of circadian rhythm IEP Neighborhood
BP GO:0042754 negative regulation of circadian rhythm IEP Neighborhood
BP GO:0043094 cellular metabolic compound salvage IEP Neighborhood
BP GO:0043100 pyrimidine nucleobase salvage IEP Neighborhood
BP GO:0043393 regulation of protein binding IEP Neighborhood
BP GO:0043433 negative regulation of DNA-binding transcription factor activity IEP Neighborhood
BP GO:0043496 regulation of protein homodimerization activity IEP Neighborhood
BP GO:0043562 cellular response to nitrogen levels IEP Neighborhood
BP GO:0043647 inositol phosphate metabolic process IEP Neighborhood
BP GO:0043966 histone H3 acetylation IEP Neighborhood
MF GO:0044212 transcription regulatory region DNA binding IEP Neighborhood
BP GO:0044242 cellular lipid catabolic process IEP Neighborhood
BP GO:0044248 cellular catabolic process IEP Neighborhood
BP GO:0044249 cellular biosynthetic process IEP Neighborhood
BP GO:0044257 cellular protein catabolic process IEP Neighborhood
BP GO:0044281 small molecule metabolic process IEP Neighborhood
BP GO:0044283 small molecule biosynthetic process IEP Neighborhood
BP GO:0045454 cell redox homeostasis IEP Neighborhood
BP GO:0045893 positive regulation of transcription, DNA-templated IEP Neighborhood
BP GO:0045935 positive regulation of nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0046112 nucleobase biosynthetic process IEP Neighborhood
BP GO:0046165 alcohol biosynthetic process IEP Neighborhood
BP GO:0046173 polyol biosynthetic process IEP Neighborhood
BP GO:0046209 nitric oxide metabolic process IEP Neighborhood
MF GO:0046429 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase activity IEP Neighborhood
BP GO:0046677 response to antibiotic IEP Neighborhood
BP GO:0046686 response to cadmium ion IEP Neighborhood
MF GO:0046857 oxidoreductase activity, acting on other nitrogenous compounds as donors, with NAD or NADP as acceptor IEP Neighborhood
BP GO:0046885 regulation of hormone biosynthetic process IEP Neighborhood
MF GO:0047635 alanine-oxo-acid transaminase activity IEP Neighborhood
MF GO:0047958 glycine:2-oxoglutarate aminotransferase activity IEP Neighborhood
BP GO:0048506 regulation of timing of meristematic phase transition IEP Neighborhood
BP GO:0048510 regulation of timing of transition from vegetative to reproductive phase IEP Neighborhood
BP GO:0048571 long-day photoperiodism IEP Neighborhood
BP GO:0048573 photoperiodism, flowering IEP Neighborhood
BP GO:0048574 long-day photoperiodism, flowering IEP Neighborhood
BP GO:0048878 chemical homeostasis IEP Neighborhood
MF GO:0050347 trans-octaprenyltranstransferase activity IEP Neighborhood
BP GO:0050794 regulation of cellular process IEP Neighborhood
BP GO:0050801 ion homeostasis IEP Neighborhood
BP GO:0051017 actin filament bundle assembly IEP Neighborhood
BP GO:0051090 regulation of DNA-binding transcription factor activity IEP Neighborhood
BP GO:0051098 regulation of binding IEP Neighborhood
BP GO:0051171 regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051173 positive regulation of nitrogen compound metabolic process IEP Neighborhood
BP GO:0051186 cofactor metabolic process IEP Neighborhood
BP GO:0051187 cofactor catabolic process IEP Neighborhood
BP GO:0051252 regulation of RNA metabolic process IEP Neighborhood
BP GO:0051254 positive regulation of RNA metabolic process IEP Neighborhood
BP GO:0051453 regulation of intracellular pH IEP Neighborhood
BP GO:0051640 organelle localization IEP Neighborhood
BP GO:0051644 plastid localization IEP Neighborhood
BP GO:0051656 establishment of organelle localization IEP Neighborhood
BP GO:0051667 establishment of plastid localization IEP Neighborhood
MF GO:0051745 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase activity IEP Neighborhood
MF GO:0052592 oxidoreductase activity, acting on CH or CH2 groups, with an iron-sulfur protein as acceptor IEP Neighborhood
BP GO:0055067 monovalent inorganic cation homeostasis IEP Neighborhood
BP GO:0055080 cation homeostasis IEP Neighborhood
BP GO:0055082 cellular chemical homeostasis IEP Neighborhood
BP GO:0060255 regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0061572 actin filament bundle organization IEP Neighborhood
BP GO:0065008 regulation of biological quality IEP Neighborhood
BP GO:0065009 regulation of molecular function IEP Neighborhood
BP GO:0070838 divalent metal ion transport IEP Neighborhood
BP GO:0071214 cellular response to abiotic stimulus IEP Neighborhood
BP GO:0071478 cellular response to radiation IEP Neighborhood
BP GO:0071482 cellular response to light stimulus IEP Neighborhood
BP GO:0071483 cellular response to blue light IEP Neighborhood
BP GO:0071941 nitrogen cycle metabolic process IEP Neighborhood
BP GO:0072511 divalent inorganic cation transport IEP Neighborhood
BP GO:0072593 reactive oxygen species metabolic process IEP Neighborhood
BP GO:0080090 regulation of primary metabolic process IEP Neighborhood
BP GO:0090354 regulation of auxin metabolic process IEP Neighborhood
BP GO:0090407 organophosphate biosynthetic process IEP Neighborhood
MF GO:0097159 organic cyclic compound binding IEP Neighborhood
BP GO:0097305 response to alcohol IEP Neighborhood
BP GO:0097435 supramolecular fiber organization IEP Neighborhood
BP GO:0104004 cellular response to environmental stimulus IEP Neighborhood
MF GO:1901363 heterocyclic compound binding IEP Neighborhood
BP GO:1901576 organic substance biosynthetic process IEP Neighborhood
BP GO:1901615 organic hydroxy compound metabolic process IEP Neighborhood
BP GO:1901617 organic hydroxy compound biosynthetic process IEP Neighborhood
BP GO:1901661 quinone metabolic process IEP Neighborhood
BP GO:1901663 quinone biosynthetic process IEP Neighborhood
BP GO:1901700 response to oxygen-containing compound IEP Neighborhood
BP GO:1902680 positive regulation of RNA biosynthetic process IEP Neighborhood
BP GO:1903506 regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:1903508 positive regulation of nucleic acid-templated transcription IEP Neighborhood
BP GO:2000071 regulation of defense response by callose deposition IEP Neighborhood
BP GO:2000112 regulation of cellular macromolecule biosynthetic process IEP Neighborhood
BP GO:2001057 reactive nitrogen species metabolic process IEP Neighborhood
BP GO:2001141 regulation of RNA biosynthetic process IEP Neighborhood
InterPro domains Description Start Stop
IPR010402 CCT_domain 286 328
IPR000315 Znf_B-box 52 97
No external refs found!