AT5G16180 (ATCRS1, CRS1)

Aliases : ATCRS1, CRS1

Description : ortholog of maize chloroplast splicing factor CRS1

Gene families : OG0000748 (Archaeplastida) Phylogenetic Tree(s): OG0000748_tree ,
OG_05_0011370 (LandPlants) Phylogenetic Tree(s): OG_05_0011370_tree ,
OG_06_0011406 (SeedPlants) Phylogenetic Tree(s): OG_06_0011406_tree

Sequence : coding (download), protein (download)

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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: AT5G16180
Cluster	HCCA: Cluster_86

Target	Alias	Description	ECC score	Gene Family Method
GSVIVT01008296001	No alias	CRM-domain containing factor CFM3,...	0.03	Archaeplastida
GSVIVT01018109001	No alias	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
GSVIVT01032542001	No alias	RNA processing.organelle machineries.RNA...	0.04	Archaeplastida
Gb_18301	No alias	CRM-domain containing factor CFM2, chloroplastic...	0.03	Archaeplastida
Gb_28260	No alias	no hits & (original description: none)	0.02	Archaeplastida
LOC_Os04g39060.2	No alias	CRM-domain containing factor CFM2, chloroplastic...	0.02	Archaeplastida
MA_10233916g0010	No alias	CRM-domain containing factor CFM2, chloroplastic...	0.02	Archaeplastida
MA_10432072g0010	No alias	CFM2-type plastidial RNA splicing factor	0.03	Archaeplastida
MA_10435740g0010	No alias	CFM2-type plastidial RNA splicing factor	0.03	Archaeplastida
MA_8161870g0010	No alias	CRM-domain containing factor CFM2, chloroplastic...	0.02	Archaeplastida
Pp3c12_15870V3.1	No alias	CRM family member 2	0.03	Archaeplastida
Pp3c13_17270V3.1	No alias	CRM family member 2	0.03	Archaeplastida
Pp3c7_23880V3.1	No alias	CRM family member 2	0.03	Archaeplastida
Smo120007	No alias	CRM-domain containing factor CFM3,...	0.03	Archaeplastida
Solyc03g119450.3.1	No alias	CRM-domain containing factor CFM3,...	0.04	Archaeplastida
Solyc07g039500.4.1	No alias	CRM-domain containing factor CFM3,...	0.05	Archaeplastida
Solyc09g083350.3.1	No alias	CFM3-type plastidial RNA splicing factor	0.03	Archaeplastida
Zm00001e011272_P001	No alias	CFM3-type plastidial RNA splicing factor	0.03	Archaeplastida
Zm00001e032339_P002	No alias	CRM-domain containing factor CFM3,...	0.03	Archaeplastida
Zm00001e033939_P001	No alias	CRM-domain containing factor CFM3,...	0.05	Archaeplastida

Type	GO Term	Name	Evidence	Source
BP	GO:0000373	Group II intron splicing	IDA	Interproscan
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
CC	GO:0009507	chloroplast	ISM	Interproscan
CC	GO:0009536	plastid	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
CC	GO:0044424	intracellular part	None	Extended
CC	GO:0044444	cytoplasmic part	None	Extended
CC	GO:0044464	cell part	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0000175	3'-5'-exoribonuclease activity	IEP	Neighborhood
BP	GO:0000304	response to singlet oxygen	IEP	Neighborhood
MF	GO:0003924	GTPase activity	IEP	Neighborhood
MF	GO:0003973	(S)-2-hydroxy-acid oxidase activity	IEP	Neighborhood
MF	GO:0004222	metalloendopeptidase activity	IEP	Neighborhood
MF	GO:0004532	exoribonuclease activity	IEP	Neighborhood
MF	GO:0005247	voltage-gated chloride channel activity	IEP	Neighborhood
MF	GO:0005253	anion channel activity	IEP	Neighborhood
MF	GO:0005254	chloride channel activity	IEP	Neighborhood
MF	GO:0005509	calcium ion binding	IEP	Neighborhood
MF	GO:0005524	ATP binding	IEP	Neighborhood
BP	GO:0006400	tRNA modification	IEP	Neighborhood
BP	GO:0006821	chloride transport	IEP	Neighborhood
BP	GO:0006874	cellular calcium ion homeostasis	IEP	Neighborhood
BP	GO:0007584	response to nutrient	IEP	Neighborhood
BP	GO:0008219	cell death	IEP	Neighborhood
MF	GO:0008308	voltage-gated anion channel activity	IEP	Neighborhood
MF	GO:0008408	3'-5' exonuclease activity	IEP	Neighborhood
MF	GO:0008443	phosphofructokinase activity	IEP	Neighborhood
MF	GO:0008536	Ran GTPase binding	IEP	Neighborhood
MF	GO:0008728	GTP diphosphokinase activity	IEP	Neighborhood
MF	GO:0008891	glycolate oxidase activity	IEP	Neighborhood
BP	GO:0009582	detection of abiotic stimulus	IEP	Neighborhood
BP	GO:0009583	detection of light stimulus	IEP	Neighborhood
CC	GO:0009707	chloroplast outer membrane	IEP	Neighborhood
BP	GO:0009785	blue light signaling pathway	IEP	Neighborhood
MF	GO:0009881	photoreceptor activity	IEP	Neighborhood
MF	GO:0009882	blue light photoreceptor activity	IEP	Neighborhood
BP	GO:0010109	regulation of photosynthesis	IEP	Neighborhood
BP	GO:0010204	defense response signaling pathway, resistance gene-independent	IEP	Neighborhood
CC	GO:0010318	pyrophosphate-dependent phosphofructokinase complex, beta-subunit complex	IEP	Neighborhood
BP	GO:0010343	singlet oxygen-mediated programmed cell death	IEP	Neighborhood
BP	GO:0010617	circadian regulation of calcium ion oscillation	IEP	Neighborhood
BP	GO:0012501	programmed cell death	IEP	Neighborhood
MF	GO:0015108	chloride transmembrane transporter activity	IEP	Neighborhood
MF	GO:0016778	diphosphotransferase activity	IEP	Neighborhood
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016896	exoribonuclease activity, producing 5'-phosphomonoesters	IEP	Neighborhood
MF	GO:0016899	oxidoreductase activity, acting on the CH-OH group of donors, oxygen as acceptor	IEP	Neighborhood
MF	GO:0019200	carbohydrate kinase activity	IEP	Neighborhood
BP	GO:0030522	intracellular receptor signaling pathway	IEP	Neighborhood
MF	GO:0030554	adenyl nucleotide binding	IEP	Neighborhood
CC	GO:0031969	chloroplast membrane	IEP	Neighborhood
MF	GO:0032559	adenyl ribonucleotide binding	IEP	Neighborhood
BP	GO:0036473	cell death in response to oxidative stress	IEP	Neighborhood
MF	GO:0038023	signaling receptor activity	IEP	Neighborhood
CC	GO:0042170	plastid membrane	IEP	Neighborhood
BP	GO:0046777	protein autophosphorylation	IEP	Neighborhood
MF	GO:0047334	diphosphate-fructose-6-phosphate 1-phosphotransferase activity	IEP	Neighborhood
BP	GO:0051480	regulation of cytosolic calcium ion concentration	IEP	Neighborhood
MF	GO:0060089	molecular transducer activity	IEP	Neighborhood
BP	GO:0071483	cellular response to blue light	IEP	Neighborhood
BP	GO:0097468	programmed cell death in response to reactive oxygen species	IEP	Neighborhood

InterPro domains	Description	Start	Stop
IPR001890	RNA-binding_CRM	572	659
IPR001890	RNA-binding_CRM	361	445
IPR001890	RNA-binding_CRM	207	290

External Links

No external refs found!

AT5G16180 (ATCRS1, CRS1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation