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  5. MA_10433102g0010

MA_10433102g0010


Description : scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex


Gene families : OG0001454 (Archaeplastida) Phylogenetic Tree(s): OG0001454_tree ,
OG_05_0002112 (LandPlants) Phylogenetic Tree(s): OG_05_0002112_tree ,
OG_06_0001751 (SeedPlants) Phylogenetic Tree(s): OG_06_0001751_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_10433102g0010
Cluster HCCA: Cluster_478

Target Alias Description ECC score Gene Family Method Actions
AT3G06290 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.03 Archaeplastida
Pp3c3_29590V3.1 No alias SAC3/GANP/Nin1/mts3/eIF-3 p25 family 0.02 Archaeplastida
Solyc12g035670.3.1 No alias scaffold component GANP/SAC3 of TREX-2 mRNP trafficking complex 0.05 Archaeplastida

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP Neighborhood
MF GO:0003676 nucleic acid binding IEP Neighborhood
MF GO:0003723 RNA binding IEP Neighborhood
MF GO:0004527 exonuclease activity IEP Neighborhood
BP GO:0006139 nucleobase-containing compound metabolic process IEP Neighborhood
BP GO:0006298 mismatch repair IEP Neighborhood
BP GO:0006725 cellular aromatic compound metabolic process IEP Neighborhood
MF GO:0008408 3'-5' exonuclease activity IEP Neighborhood
BP GO:0009451 RNA modification IEP Neighborhood
BP GO:0009892 negative regulation of metabolic process IEP Neighborhood
MF GO:0009982 pseudouridine synthase activity IEP Neighborhood
BP GO:0010605 negative regulation of macromolecule metabolic process IEP Neighborhood
BP GO:0010629 negative regulation of gene expression IEP Neighborhood
BP GO:0016070 RNA metabolic process IEP Neighborhood
BP GO:0016458 gene silencing IEP Neighborhood
MF GO:0016866 intramolecular transferase activity IEP Neighborhood
MF GO:0030983 mismatched DNA binding IEP Neighborhood
BP GO:0031047 gene silencing by RNA IEP Neighborhood
BP GO:0034641 cellular nitrogen compound metabolic process IEP Neighborhood
BP GO:0046483 heterocycle metabolic process IEP Neighborhood
BP GO:0048519 negative regulation of biological process IEP Neighborhood
BP GO:0090304 nucleic acid metabolic process IEP Neighborhood
BP GO:1901360 organic cyclic compound metabolic process IEP Neighborhood
InterPro domains Description Start Stop
IPR005062 SAC3/GANP/THP3 175 267
No external refs found!